RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 BACE1P56817 501 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 EVX2Q03828 476 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 ICA1Q05084 483 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 SPP2Q13103 211 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 USP17L2Q6R6M4 530 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 MFSD6Q6ZSS7 791 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 ANKRD23Q86SG2 305 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 PARK7Q99497 189 aaKnown RBP10.83□□□□□ -0.68
NUP54-207ENST00000508583 ESYT1Q9BSJ8 1104 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 CFHR5Q9BXR6 569 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 CNNM2Q9H8M5 875 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 SYNPO2Q9UMS6 1093 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 PHIPQ8WWQ0 1821 aa10.83□□□□□ -0.68
NUP54-207ENST00000508583 LAMA4Q16363 1823 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 PLIN4Q96Q06 1357 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 TSPY2A6NKD2 308 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 HAX1O00165 279 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 ORC4O43929 436 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 REC8O95072 547 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 RASA1P20936 1047 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 TRDNQ13061 729 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 MTMR2Q13614 643 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 RRP1BQ14684 758 aaKnown RBP10.82□□□□□ -0.68
NUP54-207ENST00000508583 CCDC178Q5BJE1 867 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 NOM1Q5C9Z4 860 aaKnown RBP10.82□□□□□ -0.68
NUP54-207ENST00000508583 SH3D19Q5HYK7 790 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 AKNAD1Q5T1N1 836 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 RNF20Q5VTR2 975 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 GADL1Q6ZQY3 521 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 STAG1Q8WVM7 1258 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 BRI3BPQ8WY22 251 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 LPAR1Q92633 364 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 ESR2Q92731 530 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 KIAA1683Q9H0B3 1180 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 ZFYVE28Q9HCC9 887 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 GOPCQ9HD26 462 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 TOMM22Q9NS69 142 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 RNF186Q9NXI6 227 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.82□□□□□ -0.68
NUP54-207ENST00000508583 AGTPBP1Q9UPW5 1226 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 PTPRFP10586 1907 aa10.82□□□□□ -0.68
NUP54-207ENST00000508583 BTBD19C9JJ37 291 aa10.81□□□□□ -0.68
NUP54-207ENST00000508583 FOXN1O15353 648 aa10.81□□□□□ -0.68
NUP54-207ENST00000508583 RANBP6O60518 1105 aaKnown RBP10.81□□□□□ -0.68
NUP54-207ENST00000508583 TRPA1O75762 1119 aa10.81□□□□□ -0.68
NUP54-207ENST00000508583 FGRP09769 529 aa10.81□□□□□ -0.68
NUP54-207ENST00000508583 AKR1B1P15121 316 aa10.81□□□□□ -0.68
NUP54-207ENST00000508583 OSBPP22059 807 aa10.81□□□□□ -0.68
NUP54-207ENST00000508583 HMGCS2P54868 508 aa10.81□□□□□ -0.68
NUP54-207ENST00000508583 SEPT2Q15019 361 aa10.81□□□□□ -0.68
NUP54-207ENST00000508583 TAF1CQ15572 869 aaPredicted RBP10.81□□□□□ -0.68
NUP54-207ENST00000508583 SKAP1Q86WV1 359 aa10.81□□□□□ -0.68
NUP54-207ENST00000508583 GTF3C2Q8WUA4 911 aaPredicted RBP10.81□□□□□ -0.68
NUP54-207ENST00000508583 KRT23Q9C075 422 aa10.81□□□□□ -0.68
NUP54-207ENST00000508583 ANO2Q9NQ90 1003 aa10.81□□□□□ -0.68
NUP54-207ENST00000508583 TSKSQ9UJT2 592 aa10.81□□□□□ -0.68
NUP54-207ENST00000508583 LOC285556D6RIA3 1793 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 PDHXO00330 501 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 IGF2BP3O00425 579 aaKnown RBP eCLIP10.8□□□□□ -0.68
NUP54-207ENST00000508583 PRDM1O75626 825 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 TTLL1O95922 423 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 HAND2P61296 217 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 TFAP4Q01664 338 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 CTDSPL2Q05D32 466 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 ARHGEF6Q15052 776 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 SHROOM1Q2M3G4 852 aaPredicted RBP10.8□□□□□ -0.68
NUP54-207ENST00000508583 RRP12Q5JTH9 1297 aaKnown RBP10.8□□□□□ -0.68
NUP54-207ENST00000508583 CCDC84Q86UT8 332 aaPredicted RBP10.8□□□□□ -0.68
NUP54-207ENST00000508583 IQCA1Q86XH1 822 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 STK11IPQ8N1F8 1099 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 NEDD1Q8NHV4 660 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 SMCR8Q8TEV9 937 aaPredicted RBP10.8□□□□□ -0.68
NUP54-207ENST00000508583 MAP4K1Q92918 833 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 C12orf42Q96LP6 360 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 NYAP2Q9P242 653 aa10.8□□□□□ -0.68
NUP54-207ENST00000508583 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.8□□□□□ -0.68
NUP54-207ENST00000508583 SMIM22K7EJ46 135 aa10.79□□□□□ -0.68
NUP54-207ENST00000508583 EPB41L2O43491 1005 aaKnown RBP10.79□□□□□ -0.68
NUP54-207ENST00000508583 IRX3P78415 501 aaPredicted RBP10.79□□□□□ -0.68
NUP54-207ENST00000508583 ATP2B2Q01814 1243 aa10.79□□□□□ -0.68
NUP54-207ENST00000508583 RALYLQ86SE5 291 aaKnown RBP10.79□□□□□ -0.68
NUP54-207ENST00000508583 FAM43AQ8N2R8 423 aa10.79□□□□□ -0.68
NUP54-207ENST00000508583 PTPN18Q99952 460 aa10.79□□□□□ -0.68
NUP54-207ENST00000508583 PRDM10Q9NQV6 1147 aa10.79□□□□□ -0.68
NUP54-207ENST00000508583 MTMR4Q9NYA4 1195 aa10.79□□□□□ -0.68
NUP54-207ENST00000508583 TMX2Q9Y320 296 aa10.79□□□□□ -0.68
NUP54-207ENST00000508583 RBM8AQ9Y5S9 174 aaKnown RBP10.79□□□□□ -0.68
NUP54-207ENST00000508583 GREB1LQ9C091 1923 aaPredicted RBP10.78□□□□□ -0.68
NUP54-207ENST00000508583 USP17L15C9J2P7 530 aa10.78□□□□□ -0.68
NUP54-207ENST00000508583 USP17L13C9JLJ4 530 aa10.78□□□□□ -0.68
NUP54-207ENST00000508583 USP17L11C9JVI0 530 aa10.78□□□□□ -0.68
NUP54-207ENST00000508583 USP17L18D6R9N7 530 aa10.78□□□□□ -0.68
NUP54-207ENST00000508583 USP17L22D6RA61 530 aa10.78□□□□□ -0.68
NUP54-207ENST00000508583 USP17L17D6RBQ6 530 aa10.78□□□□□ -0.68
NUP54-207ENST00000508583 USP17L19D6RCP7 530 aa10.78□□□□□ -0.68
NUP54-207ENST00000508583 USP17L20D6RJB6 530 aa10.78□□□□□ -0.68
NUP54-207ENST00000508583 EEF2P13639 858 aaKnown RBP10.78□□□□□ -0.68
NUP54-207ENST00000508583 ZKSCAN1P17029 563 aaPredicted RBP10.78□□□□□ -0.68
NUP54-207ENST00000508583 HOXA7P31268 230 aaPredicted RBP10.78□□□□□ -0.68
NUP54-207ENST00000508583 GUCY1A2P33402 732 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms