RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 NOC2LQ9Y3T9 749 aaKnown RBP3.39□□□□□ -1.87
NEDD4-208ENST00000508342 IL16Q14005 1332 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 TUBGCP6Q96RT7 1819 aa3.39□□□□□ -1.87
NEDD4-208ENST00000508342 ALAS1P13196 640 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 COPB2P35606 906 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 CETN2P41208 172 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 NECAB2Q7Z6G3 386 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 METTL13Q8N6R0 699 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 KRT23Q9C075 422 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 HOXC10Q9NYD6 342 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 TRPC6Q9Y210 931 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 A0A1B0GUL7 405 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 IFIT3O14879 490 aaKnown RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 TRIM66O15016 1216 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 ATN1P54259 1190 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 CCDC12Q8WUD4 166 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 CCPG1Q9ULG6 757 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 MINPP1Q9UNW1 487 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 USTQ9Y2C2 406 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 MYH8P13535 1937 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 RGPD3A6NKT7 1758 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 RGPD4Q7Z3J3 1758 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 VPS37CA5D8V6 355 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 PRC1O43663 620 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 RRP9O43818 475 aaKnown RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 HOXB7P09629 217 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 SSR1P43307 286 aaKnown RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 CACNB3P54284 484 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 SSRP1Q08945 709 aaKnown RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 GPS2Q13227 327 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 ZNF697Q5TEC3 545 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 LINS1Q8NG48 757 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 SRRTQ9BXP5 876 aaKnown RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 BACH1O14867 736 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 KIF4AO95239 1232 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 SRGNP10124 158 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 HMGN5P82970 282 aaKnown RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 ARRDC4Q8NCT1 418 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 GPRC5AQ8NFJ5 357 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 OR6J1Q8NGC5 347 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 SUCLG2Q96I99 432 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 RUFY1Q96T51 708 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 PDGFDQ9GZP0 370 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 HMX1Q9NP08 348 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 RNF186Q9NXI6 227 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 PI4KBQ9UBF8 816 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 TAF1LQ8IZX4 1826 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 NFAT5O94916 1531 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 ADGRB1O14514 1584 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 DDX39AO00148 427 aaKnown RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 IGBP1P78318 339 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 MTMR2Q13614 643 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 TMEM67Q5HYA8 995 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 NBPF10Q6P3W6 841 aaKnown RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 MTERF4Q7Z6M4 381 aaKnown RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 CTU1Q7Z7A3 348 aaKnown RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 MCF2L2Q86YR7 1114 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 FAM117AQ9C073 453 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 SMC3Q9UQE7 1217 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 RIPOR2Q9Y4F9 1068 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 CCDC171Q6TFL3 1326 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 NUP98P52948 1817 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 GNAT1P11488 350 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 EZRP15311 586 aaKnown RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 STK3Q13188 491 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 HACE1Q8IYU2 909 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 TMEM57Q8N5G2 664 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 ANKRD13CQ8N6S4 541 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 PDILTQ8N807 584 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 CHURC1Q8WUH1 139 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 LARP6Q9BRS8 491 aaKnown RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 DEFB129Q9H1M3 183 aa3.38□□□□□ -1.87
NEDD4-208ENST00000508342 RPAP3Q9H6T3 665 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-208ENST00000508342 TESPA1A2RU30 521 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 MBD4O95243 580 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 RASA3Q14644 834 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 NBPF9Q3BBW0 867 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 FILIP1LQ4L180 1135 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ELMOD1Q8N336 334 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 RNF169Q8NCN4 708 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ADD3Q9UEY8 706 aaKnown RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 NOL7Q9UMY1 257 aaKnown RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 EXOC6BQ9Y2D4 811 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 PXDNLA1KZ92 1463 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 DCDC2CA8MYV0 355 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 USP17L15C9J2P7 530 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 USP17L13C9JLJ4 530 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 USP17L11C9JVI0 530 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 USP17L18D6R9N7 530 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 USP17L22D6RA61 530 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 USP17L17D6RBQ6 530 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 USP17L19D6RCP7 530 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 USP17L20D6RJB6 530 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 PDE4AP27815 886 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 USP17L24Q0WX57 530 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 UBE4AQ14139 1066 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 ZNF354CQ86Y25 554 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 MRPL50Q8N5N7 158 aaKnown RBP3.37□□□□□ -1.87
NEDD4-208ENST00000508342 TRPM4Q8TD43 1214 aa3.37□□□□□ -1.87
NEDD4-208ENST00000508342 PPP2R3CQ969Q6 453 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms