RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 AMOTL1Q8IY63 956 aa21.64■■□□□ 1.05
SQSTM1-209ENST00000504627 DDRGK1Q96HY6 314 aa21.64■■□□□ 1.05
SQSTM1-209ENST00000504627 ZBTB47Q9UFB7 747 aaPredicted RBP21.64■■□□□ 1.05
SQSTM1-209ENST00000504627 PRKAB2O43741 272 aa21.63■■□□□ 1.05
SQSTM1-209ENST00000504627 UBE3CQ15386 1083 aa21.63■■□□□ 1.05
SQSTM1-209ENST00000504627 ANKRD45Q5TZF3 282 aa21.63■■□□□ 1.05
SQSTM1-209ENST00000504627 CCAR1Q8IX12 1150 aaKnown RBP21.63■■□□□ 1.05
SQSTM1-209ENST00000504627 GPRC5AQ8NFJ5 357 aa21.63■■□□□ 1.05
SQSTM1-209ENST00000504627 GTF3C2Q8WUA4 911 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-209ENST00000504627 ATP8A2Q9NTI2 1148 aa21.63■■□□□ 1.05
SQSTM1-209ENST00000504627 MORF4L1Q9UBU8 362 aa21.63■■□□□ 1.05
SQSTM1-209ENST00000504627 NAV1Q8NEY1 1877 aa21.62■■□□□ 1.05
SQSTM1-209ENST00000504627 INHAP05111 366 aa21.62■■□□□ 1.05
SQSTM1-209ENST00000504627 GJB1P08034 283 aa21.62■■□□□ 1.05
SQSTM1-209ENST00000504627 CYP2D6P10635 497 aa21.62■■□□□ 1.05
SQSTM1-209ENST00000504627 GABPAQ06546 454 aa21.62■■□□□ 1.05
SQSTM1-209ENST00000504627 SWAP70Q9UH65 585 aa21.62■■□□□ 1.05
SQSTM1-209ENST00000504627 USP17L15C9J2P7 530 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 USP17L13C9JLJ4 530 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 USP17L11C9JVI0 530 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 USP17L18D6R9N7 530 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 USP17L22D6RA61 530 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 USP17L17D6RBQ6 530 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 USP17L19D6RCP7 530 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 USP17L20D6RJB6 530 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 EVX2Q03828 476 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 USP17L24Q0WX57 530 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 SEPT2Q15019 361 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 ACER1Q8TDN7 264 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 C12orf42Q96LP6 360 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 PAGR1Q9BTK6 254 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 LNPKQ9C0E8 428 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 KIAA1683Q9H0B3 1180 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 UNC93B1Q9H1C4 597 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 SLC4A4Q9Y6R1 1079 aa21.61■■□□□ 1.05
SQSTM1-209ENST00000504627 PEX10O60683 326 aa21.6■■□□□ 1.05
SQSTM1-209ENST00000504627 CHGBP05060 677 aa21.6■■□□□ 1.05
SQSTM1-209ENST00000504627 GJA8P48165 433 aa21.6■■□□□ 1.05
SQSTM1-209ENST00000504627 TXNRD2Q9NNW7 524 aa21.6■■□□□ 1.05
SQSTM1-209ENST00000504627 DDX60LQ5H9U9 1706 aaKnown RBP21.59■■□□□ 1.05
SQSTM1-209ENST00000504627 TSHZ3Q63HK5 1081 aa21.59■■□□□ 1.05
SQSTM1-209ENST00000504627 SLC44A5Q8NCS7 719 aa21.59■■□□□ 1.05
SQSTM1-209ENST00000504627 SHISA4Q96DD7 197 aa21.59■■□□□ 1.05
SQSTM1-209ENST00000504627 DYNLL2Q96FJ2 89 aa21.59■■□□□ 1.05
SQSTM1-209ENST00000504627 PUS7LQ9H0K6 701 aaKnown RBP21.59■■□□□ 1.05
SQSTM1-209ENST00000504627 CWC22Q9HCG8 908 aaKnown RBP21.59■■□□□ 1.05
SQSTM1-209ENST00000504627 RBPJLQ9UBG7 517 aa21.59■■□□□ 1.05
SQSTM1-209ENST00000504627 VCAM1P19320 739 aa21.58■■□□□ 1.05
SQSTM1-209ENST00000504627 MAPK4P31152 587 aa21.58■■□□□ 1.05
SQSTM1-209ENST00000504627 GUCY1A2P33402 732 aa21.58■■□□□ 1.05
SQSTM1-209ENST00000504627 ERVK-9P63128 1117 aa21.58■■□□□ 1.05
SQSTM1-209ENST00000504627 ERVK-24P63145 666 aa21.58■■□□□ 1.05
SQSTM1-209ENST00000504627 TMEM179Q6ZVK1 233 aa21.58■■□□□ 1.05
SQSTM1-209ENST00000504627 U2AF1L4Q8WU68 220 aaKnown RBP21.58■■□□□ 1.05
SQSTM1-209ENST00000504627 DOCK3Q8IZD9 2030 aa21.58■■□□□ 1.04
SQSTM1-209ENST00000504627 USP17L12C9JPN9 530 aa21.57■■□□□ 1.04
SQSTM1-209ENST00000504627 USP17L21D6R901 530 aa21.57■■□□□ 1.04
SQSTM1-209ENST00000504627 PDE4AP27815 886 aa21.57■■□□□ 1.04
SQSTM1-209ENST00000504627 Q3C1V9 767 aa21.57■■□□□ 1.04
SQSTM1-209ENST00000504627 CATSPERGQ6ZRH7 1159 aa21.57■■□□□ 1.04
SQSTM1-209ENST00000504627 KBTBD3Q8NAB2 608 aa21.57■■□□□ 1.04
SQSTM1-209ENST00000504627 NUDT12Q9BQG2 462 aa21.57■■□□□ 1.04
SQSTM1-209ENST00000504627 RPAP3Q9H6T3 665 aaPredicted RBP21.57■■□□□ 1.04
SQSTM1-209ENST00000504627 GJD2Q9UKL4 321 aa21.57■■□□□ 1.04
SQSTM1-209ENST00000504627 CYP2D7A0A087X1C5 515 aa21.56■■□□□ 1.04
SQSTM1-209ENST00000504627 SGPL1O95470 568 aa21.56■■□□□ 1.04
SQSTM1-209ENST00000504627 TFRCP02786 760 aaKnown RBP21.56■■□□□ 1.04
SQSTM1-209ENST00000504627 HMGCRP04035 888 aa21.56■■□□□ 1.04
SQSTM1-209ENST00000504627 CYP2B6P20813 491 aa21.56■■□□□ 1.04
SQSTM1-209ENST00000504627 C12orf60Q5U649 245 aa21.56■■□□□ 1.04
SQSTM1-209ENST00000504627 SKAP1Q86WV1 359 aa21.56■■□□□ 1.04
SQSTM1-209ENST00000504627 SOCS4Q8WXH5 440 aa21.56■■□□□ 1.04
SQSTM1-209ENST00000504627 RABGAP1Q9Y3P9 1069 aa21.56■■□□□ 1.04
SQSTM1-209ENST00000504627 CCNA1P78396 465 aa21.55■■□□□ 1.04
SQSTM1-209ENST00000504627 CCDC17Q96LX7 622 aa21.55■■□□□ 1.04
SQSTM1-209ENST00000504627 DEFB118Q96PH6 123 aa21.55■■□□□ 1.04
SQSTM1-209ENST00000504627 A0A1W2PRG0 241 aa21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 ERC2O15083 957 aa21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 ZFYP08048 801 aaPredicted RBP21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 AKR1B1P15121 316 aa21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 CDK8P49336 464 aa21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 LRRFIP1Q32MZ4 808 aaKnown RBP21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 WDR78Q5VTH9 848 aa21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 CTR9Q6PD62 1173 aa21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 GPR142Q7Z601 462 aa21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 DPF3Q92784 378 aa21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 PORCNQ9H237 461 aa21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 ARHGEF10LQ9HCE6 1279 aa21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 TTC41PQ6P2S7 1318 aa21.54■■□□□ 1.04
SQSTM1-209ENST00000504627 MYH7P12883 1935 aa21.53■■□□□ 1.04
SQSTM1-209ENST00000504627 RNF113AO15541 343 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-209ENST00000504627 ICA1Q05084 483 aa21.53■■□□□ 1.04
SQSTM1-209ENST00000504627 C16orf86Q6ZW13 317 aa21.53■■□□□ 1.04
SQSTM1-209ENST00000504627 PLEKHH3Q7Z736 793 aa21.53■■□□□ 1.04
SQSTM1-209ENST00000504627 APPBP2Q92624 585 aa21.53■■□□□ 1.04
SQSTM1-209ENST00000504627 STRBPQ96SI9 672 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-209ENST00000504627 HTATIP2Q9BUP3 242 aa21.53■■□□□ 1.04
SQSTM1-209ENST00000504627 TANGO6Q9C0B7 1094 aa21.53■■□□□ 1.04
SQSTM1-209ENST00000504627 SH2D4AQ9H788 454 aa21.53■■□□□ 1.04
SQSTM1-209ENST00000504627 ARPP21Q9UBL0 812 aaPredicted RBP21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms