RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 NDUFB9Q9Y6M9 179 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 SPTA1P02549 2419 aa5.89□□□□□ -1.47
USP54-216ENST00000498143 SPDYE2BA6NHP3 402 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 H0Y858 1186 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 DYNC1I1O14576 645 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 C6orf222P0C671 652 aaPredicted RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 SPDYE6P0CI01 402 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 NUCB2P80303 420 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 SMAD3P84022 425 aaKnown RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 SEMA3FQ13275 785 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 SPDYE2Q495Y8 402 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 CCDC92Q53HC0 331 aaPredicted RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 VPS53Q5VIR6 699 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 CCDC47Q96A33 483 aaKnown RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 BACH2Q9BYV9 841 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 GRPEL1Q9HAV7 217 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 TLR9Q9NR96 1032 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 C9orf78Q9NZ63 289 aaPredicted RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 CBX1P83916 185 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 FOXD4Q12950 439 aaPredicted RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 MCM6Q14566 821 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 GPRC5AQ8NFJ5 357 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 EPHX3Q9H6B9 360 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 CHMP5Q9NZZ3 219 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 RCAN3Q9UKA8 241 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 XDHP47989 1333 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 IFIT1P09914 478 aaKnown RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 PEX19P40855 299 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 NASPP49321 788 aaPredicted RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 SHHQ15465 462 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 FAM109BQ6ICB4 259 aaPredicted RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 DLK2Q6UY11 383 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 PRR23BQ6ZRT6 265 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 USP6NLQ92738 828 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 TANGO6Q9C0B7 1094 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 PRM3Q9NNZ6 103 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 PUF60Q9UHX1 559 aaKnown RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 ZBED9Q6R2W3 1325 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 TRAK2O60296 914 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 ATP2A2P16615 1042 aaKnown RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 ADCYAP1R1P41586 468 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 TLE2Q04725 743 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 ZYXQ15942 572 aaKnown RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 WDR66Q8TBY9 1149 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 ZNF496Q96IT1 587 aaPredicted RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 KIF2CQ99661 725 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 FAM107BQ9H098 131 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 RRAGDQ9NQL2 400 aaPredicted RBP5.88□□□□□ -1.47
USP54-216ENST00000498143 LRFN2Q9ULH4 789 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 PAXBP1Q9Y5B6 917 aa5.88□□□□□ -1.47
USP54-216ENST00000498143 MROH7Q68CQ1 1323 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 RAD50Q92878 1312 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 SPTAN1Q13813 2472 aaKnown RBP5.87□□□□□ -1.47
USP54-216ENST00000498143 RP1L1Q8IWN7 2480 aaPredicted RBP5.87□□□□□ -1.47
USP54-216ENST00000498143 SHTN1A0MZ66 631 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 NBPF26B4DH59 902 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 SP100P23497 879 aaPredicted RBP5.87□□□□□ -1.47
USP54-216ENST00000498143 MAPK4P31152 587 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 PRPHP41219 470 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 CCDC157Q569K6 752 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 MFSD14BQ5SR56 506 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 ATP6V1E2Q96A05 226 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 CLMNQ96JQ2 1002 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 YME1L1Q96TA2 773 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 SOS1Q07889 1333 aaPredicted RBP5.87□□□□□ -1.47
USP54-216ENST00000498143 ZNF462Q96JM2 2506 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 ANKRD18BA2A2Z9 1011 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 CTAGE5O15320 804 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 KINO60870 393 aaKnown RBP5.87□□□□□ -1.47
USP54-216ENST00000498143 CLTBP09497 229 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 CYP19A1P11511 503 aaPredicted RBP5.87□□□□□ -1.47
USP54-216ENST00000498143 PPP2R5AQ15172 486 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 GJC2Q5T442 439 aaPredicted RBP5.87□□□□□ -1.47
USP54-216ENST00000498143 PCSK9Q8NBP7 692 aaKnown RBP5.87□□□□□ -1.47
USP54-216ENST00000498143 COA1Q9GZY4 146 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 TOMM22Q9NS69 142 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 IRAK4Q9NWZ3 460 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.87□□□□□ -1.47
USP54-216ENST00000498143 GOLGA6L9A6NEM1 432 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 POTECB2RU33 542 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 BLVRAP53004 296 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 PDE4DQ08499 809 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 CCDC39Q9UFE4 941 aa5.87□□□□□ -1.47
USP54-216ENST00000498143 G3BP2Q9UN86 482 aaKnown RBP5.87□□□□□ -1.47
USP54-216ENST00000498143 RNMTO43148 476 aaKnown RBP5.86□□□□□ -1.47
USP54-216ENST00000498143 CEP104O60308 925 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 SUPT20HL2P0C7V6 817 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 DDX1Q92499 740 aaKnown RBP5.86□□□□□ -1.47
USP54-216ENST00000498143 RSRC1Q96IZ7 334 aaKnown RBP5.86□□□□□ -1.47
USP54-216ENST00000498143 SPATA32Q96LK8 384 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 FBXL18Q96ME1 805 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 KCNH6Q9H252 994 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 ACBD3Q9H3P7 528 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 PIDD1Q9HB75 910 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 SPATS2LQ9NUQ6 558 aaKnown RBP5.86□□□□□ -1.47
USP54-216ENST00000498143 TPX2Q9ULW0 747 aaKnown RBP5.86□□□□□ -1.47
USP54-216ENST00000498143 TMEM131LA2VDJ0 1609 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 SALL3Q9BXA9 1300 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 DYTNA2CJ06 578 aa5.86□□□□□ -1.47
USP54-216ENST00000498143 SOX1O00570 391 aaPredicted RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms