RNA–Protein interactions for RNA: ENST00000497977.1

PTPRN-218, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 701 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-218ENST00000497977 COA7Q96BR5 231 aa12.36□□□□□ -0.43
PTPRN-218ENST00000497977 ABHD8Q96I13 439 aa12.36□□□□□ -0.43
PTPRN-218ENST00000497977 DNAJC18Q9H819 358 aa12.36□□□□□ -0.43
PTPRN-218ENST00000497977 CCDC85CA6NKD9 419 aa12.35□□□□□ -0.43
PTPRN-218ENST00000497977 PSMC4P43686 418 aa12.35□□□□□ -0.43
PTPRN-218ENST00000497977 CCNA1P78396 465 aa12.35□□□□□ -0.43
PTPRN-218ENST00000497977 LACTBP83111 547 aaPredicted RBP12.35□□□□□ -0.43
PTPRN-218ENST00000497977 GPRC5AQ8NFJ5 357 aa12.35□□□□□ -0.43
PTPRN-218ENST00000497977 C12orf42Q96LP6 360 aa12.35□□□□□ -0.43
PTPRN-218ENST00000497977 RNF41Q9H4P4 317 aaPredicted RBP12.35□□□□□ -0.43
PTPRN-218ENST00000497977 CWC22Q9HCG8 908 aaKnown RBP12.35□□□□□ -0.43
PTPRN-218ENST00000497977 GOPCQ9HD26 462 aa12.35□□□□□ -0.43
PTPRN-218ENST00000497977 CPA4Q9UI42 421 aa12.35□□□□□ -0.43
PTPRN-218ENST00000497977 M0R2C6 588 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 ZNF213O14771 459 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 TSPY3P0CV98 308 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 TSPY8P0CW00 308 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 SLURP2P0DP57 97 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 CYP2C8P10632 490 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 CAPN2P17655 700 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 ATP2B2Q01814 1243 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 ICA1Q05084 483 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 MOGSQ13724 837 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 COG2Q14746 738 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 SEPT2Q15019 361 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 SLFNL1Q499Z3 407 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 CD99L2Q8TCZ2 262 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 DYNLL2Q96FJ2 89 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 R3HDMLQ9H3Y0 253 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 SYNPO2Q9UMS6 1093 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 PTPN22Q9Y2R2 807 aa12.34□□□□□ -0.43
PTPRN-218ENST00000497977 MYH2Q9UKX2 1941 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 ECM29Q5VYK3 1845 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 CYP2D6P10635 497 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 PPARAQ07869 468 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 RRP1BQ14684 758 aaKnown RBP12.33□□□□□ -0.44
PTPRN-218ENST00000497977 FAM110CQ1W6H9 321 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 CCDC178Q5BJE1 867 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 CASC1Q6TDU7 716 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 CWC27Q6UX04 472 aaKnown RBP12.33□□□□□ -0.44
PTPRN-218ENST00000497977 OTOP1Q7RTM1 612 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 RAET1EQ8TD07 263 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 TRIM47Q96LD4 638 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 SEC62Q99442 399 aaKnown RBP12.33□□□□□ -0.44
PTPRN-218ENST00000497977 TMEM106CQ9BVX2 250 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 ASCC2Q9H1I8 757 aaPredicted RBP12.33□□□□□ -0.44
PTPRN-218ENST00000497977 NYAP2Q9P242 653 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 TMX2Q9Y320 296 aa12.33□□□□□ -0.44
PTPRN-218ENST00000497977 POLR2AP24928 1970 aaKnown RBP12.32□□□□□ -0.44
PTPRN-218ENST00000497977 TSPY2A6NKD2 308 aa12.32□□□□□ -0.44
PTPRN-218ENST00000497977 TNPO2O14787 897 aaKnown RBP12.32□□□□□ -0.44
PTPRN-218ENST00000497977 MAPK4P31152 587 aa12.32□□□□□ -0.44
PTPRN-218ENST00000497977 TTC22Q5TAA0 569 aa12.32□□□□□ -0.44
PTPRN-218ENST00000497977 CATSPERGQ6ZRH7 1159 aa12.32□□□□□ -0.44
PTPRN-218ENST00000497977 MFSD6Q6ZSS7 791 aa12.32□□□□□ -0.44
PTPRN-218ENST00000497977 KIAA1211Q6ZU35 1233 aa12.32□□□□□ -0.44
PTPRN-218ENST00000497977 CCDC84Q86UT8 332 aaPredicted RBP12.32□□□□□ -0.44
PTPRN-218ENST00000497977 ANKRD13CQ8N6S4 541 aa12.32□□□□□ -0.44
PTPRN-218ENST00000497977 MB21D1Q8N884 522 aa12.32□□□□□ -0.44
PTPRN-218ENST00000497977 P2RX7Q99572 595 aaKnown RBP12.32□□□□□ -0.44
PTPRN-218ENST00000497977 TOMM22Q9NS69 142 aa12.32□□□□□ -0.44
PTPRN-218ENST00000497977 EMILIN3Q9NT22 766 aa12.32□□□□□ -0.44
PTPRN-218ENST00000497977 ANAPC4Q9UJX5 808 aa12.32□□□□□ -0.44
PTPRN-218ENST00000497977 RABGAP1Q9Y3P9 1069 aa12.32□□□□□ -0.44
PTPRN-218ENST00000497977 CTDP1Q9Y5B0 961 aaPredicted RBP12.32□□□□□ -0.44
PTPRN-218ENST00000497977 THSD7BQ9C0I4 1608 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 CYP2D7A0A087X1C5 515 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 WDR46O15213 610 aaKnown RBP12.31□□□□□ -0.44
PTPRN-218ENST00000497977 RAD21O60216 631 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 TTLL1O95922 423 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 FGAP02671 866 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 HSPD1P10809 573 aaKnown RBP12.31□□□□□ -0.44
PTPRN-218ENST00000497977 BCRP11274 1271 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 AKR1B1P15121 316 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 HERVK_113P62684 666 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 TFAP4Q01664 338 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 NMIQ13287 307 aaPredicted RBP12.31□□□□□ -0.44
PTPRN-218ENST00000497977 ZYXQ15942 572 aaKnown RBP12.31□□□□□ -0.44
PTPRN-218ENST00000497977 IMMTQ16891 758 aaKnown RBP12.31□□□□□ -0.44
PTPRN-218ENST00000497977 SLC9C1Q4G0N8 1177 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 TREML2Q5T2D2 321 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 CLIP2Q9UDT6 1046 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 SRRDQ9UH36 339 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 HPS5Q9UPZ3 1129 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 CCDC171Q6TFL3 1326 aa12.31□□□□□ -0.44
PTPRN-218ENST00000497977 NAV1Q8NEY1 1877 aa12.3□□□□□ -0.44
PTPRN-218ENST00000497977 RANBP6O60518 1105 aaKnown RBP12.3□□□□□ -0.44
PTPRN-218ENST00000497977 CAPN15O75808 1086 aa12.3□□□□□ -0.44
PTPRN-218ENST00000497977 CHGBP05060 677 aa12.3□□□□□ -0.44
PTPRN-218ENST00000497977 FDX1P10109 184 aa12.3□□□□□ -0.44
PTPRN-218ENST00000497977 EEF2P13639 858 aaKnown RBP12.3□□□□□ -0.44
PTPRN-218ENST00000497977 UBXN2AP68543 259 aa12.3□□□□□ -0.44
PTPRN-218ENST00000497977 JAG1P78504 1218 aa12.3□□□□□ -0.44
PTPRN-218ENST00000497977 TRDNQ13061 729 aa12.3□□□□□ -0.44
PTPRN-218ENST00000497977 TRMT44Q8IYL2 757 aaKnown RBP12.3□□□□□ -0.44
PTPRN-218ENST00000497977 STK11IPQ8N1F8 1099 aa12.3□□□□□ -0.44
PTPRN-218ENST00000497977 NEDD1Q8NHV4 660 aa12.3□□□□□ -0.44
PTPRN-218ENST00000497977 ACER1Q8TDN7 264 aa12.3□□□□□ -0.44
PTPRN-218ENST00000497977 MKL1Q969V6 931 aa12.3□□□□□ -0.44
PTPRN-218ENST00000497977 FAM227BQ96M60 508 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms