RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 FAM83CQ9BQN1 747 aa6.86□□□□□ -1.31
CSMD3-208ENST00000497026 CYP4F12Q9HCS2 524 aa6.86□□□□□ -1.31
CSMD3-208ENST00000497026 TONSLQ96HA7 1378 aa6.86□□□□□ -1.31
CSMD3-208ENST00000497026 GSC2O15499 205 aa6.85□□□□□ -1.31
CSMD3-208ENST00000497026 TIAF1O95411 115 aa6.85□□□□□ -1.31
CSMD3-208ENST00000497026 USP11P51784 963 aa6.85□□□□□ -1.31
CSMD3-208ENST00000497026 POU4F3Q15319 338 aa6.85□□□□□ -1.31
CSMD3-208ENST00000497026 CDPF1Q6NVV7 123 aa6.85□□□□□ -1.31
CSMD3-208ENST00000497026 FBXL6Q8N531 539 aa6.85□□□□□ -1.31
CSMD3-208ENST00000497026 SHKBP1Q8TBC3 707 aa6.85□□□□□ -1.31
CSMD3-208ENST00000497026 FBLIM1Q8WUP2 373 aa6.85□□□□□ -1.31
CSMD3-208ENST00000497026 MFSD14AQ96MC6 490 aa6.85□□□□□ -1.31
CSMD3-208ENST00000497026 TRIM56Q9BRZ2 755 aaKnown RBP6.85□□□□□ -1.31
CSMD3-208ENST00000497026 RBCK1Q9BYM8 510 aa6.85□□□□□ -1.31
CSMD3-208ENST00000497026 ZNF576Q9H609 170 aa6.85□□□□□ -1.31
CSMD3-208ENST00000497026 ABCB6Q9NP58 842 aa6.85□□□□□ -1.31
CSMD3-208ENST00000497026 ROCK2O75116 1388 aaKnown RBP6.85□□□□□ -1.31
CSMD3-208ENST00000497026 WDR64B1ANS9 1081 aa6.84□□□□□ -1.31
CSMD3-208ENST00000497026 BRD1O95696 1058 aa6.84□□□□□ -1.31
CSMD3-208ENST00000497026 MAPK1P28482 360 aa6.84□□□□□ -1.31
CSMD3-208ENST00000497026 EIF3AQ14152 1382 aaKnown RBP6.84□□□□□ -1.31
CSMD3-208ENST00000497026 GRM2Q14416 872 aa6.84□□□□□ -1.31
CSMD3-208ENST00000497026 NFKBIBQ15653 356 aa6.84□□□□□ -1.31
CSMD3-208ENST00000497026 AKAP4Q5JQC9 854 aa6.84□□□□□ -1.31
CSMD3-208ENST00000497026 TNS3Q68CZ2 1445 aa6.84□□□□□ -1.31
CSMD3-208ENST00000497026 SHISA5Q8N114 240 aa6.84□□□□□ -1.31
CSMD3-208ENST00000497026 DBNDD2Q9BQY9 259 aa6.84□□□□□ -1.31
CSMD3-208ENST00000497026 CENPJQ9HC77 1338 aaPredicted RBP6.84□□□□□ -1.31
CSMD3-208ENST00000497026 SPATA31A3Q5VYP0 1347 aa6.84□□□□□ -1.32
CSMD3-208ENST00000497026 ITPKAP23677 461 aa6.84□□□□□ -1.32
CSMD3-208ENST00000497026 SLC51AQ86UW1 340 aa6.84□□□□□ -1.32
CSMD3-208ENST00000497026 C2CD4AQ8NCU7 369 aaPredicted RBP6.84□□□□□ -1.32
CSMD3-208ENST00000497026 PMFBP1Q8TBY8 1022 aa6.84□□□□□ -1.32
CSMD3-208ENST00000497026 DMRTB1Q96MA1 342 aa6.84□□□□□ -1.32
CSMD3-208ENST00000497026 ZC3H12CQ9C0D7 883 aaKnown RBP6.84□□□□□ -1.32
CSMD3-208ENST00000497026 DNAJC25Q9H1X3 360 aa6.84□□□□□ -1.32
CSMD3-208ENST00000497026 SUGCTQ9HAC7 445 aa6.84□□□□□ -1.32
CSMD3-208ENST00000497026 DCTN4Q9UJW0 460 aa6.84□□□□□ -1.32
CSMD3-208ENST00000497026 GNEQ9Y223 722 aaKnown RBP6.84□□□□□ -1.32
CSMD3-208ENST00000497026 POLR3AO14802 1390 aaPredicted RBP6.83□□□□□ -1.32
CSMD3-208ENST00000497026 TMEM238LA0A1B0GVL6 79 aa6.83□□□□□ -1.32
CSMD3-208ENST00000497026 B3GALT4O96024 378 aa6.83□□□□□ -1.32
CSMD3-208ENST00000497026 CYP11A1P05108 521 aa6.83□□□□□ -1.32
CSMD3-208ENST00000497026 FCGRTP55899 365 aa6.83□□□□□ -1.32
CSMD3-208ENST00000497026 SOX4Q06945 474 aaPredicted RBP6.83□□□□□ -1.32
CSMD3-208ENST00000497026 DIEXFQ68CQ4 756 aaKnown RBP6.83□□□□□ -1.32
CSMD3-208ENST00000497026 KRT28Q7Z3Y7 464 aa6.83□□□□□ -1.32
CSMD3-208ENST00000497026 GLIS3Q8NEA6 775 aa6.83□□□□□ -1.32
CSMD3-208ENST00000497026 CORO1BQ9BR76 489 aa6.83□□□□□ -1.32
CSMD3-208ENST00000497026 CDK19Q9BWU1 502 aa6.83□□□□□ -1.32
CSMD3-208ENST00000497026 RAD18Q9NS91 495 aa6.83□□□□□ -1.32
CSMD3-208ENST00000497026 HIF3AQ9Y2N7 669 aa6.83□□□□□ -1.32
CSMD3-208ENST00000497026 IVNS1ABPQ9Y6Y0 642 aa6.83□□□□□ -1.32
CSMD3-208ENST00000497026 SBNO1A3KN83 1393 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 SBNO2Q9Y2G9 1366 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 AKAP12Q02952 1782 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 PRR19A6NJB7 356 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 ADH5P11766 374 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 RAB6AP20340 208 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 CD97P48960 835 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 FAAP100Q0VG06 881 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 PDE3AQ14432 1141 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 DYMQ7RTS9 669 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 KRTAP4-9Q9BYQ8 210 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 ACTL7BQ9Y614 415 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 PHRF1Q9P1Y6 1649 aaKnown RBP6.82□□□□□ -1.32
CSMD3-208ENST00000497026 NRKQ7Z2Y5 1582 aa6.82□□□□□ -1.32
CSMD3-208ENST00000497026 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.81□□□□□ -1.32
CSMD3-208ENST00000497026 PLCH1Q4KWH8 1693 aa6.81□□□□□ -1.32
CSMD3-208ENST00000497026 PNMA6FA0A0J9YX94 578 aa6.81□□□□□ -1.32
CSMD3-208ENST00000497026 FAM95CA0A1B0GW59 222 aa6.81□□□□□ -1.32
CSMD3-208ENST00000497026 HOXA10P31260 410 aaPredicted RBP6.81□□□□□ -1.32
CSMD3-208ENST00000497026 ALKBH8Q96BT7 664 aaKnown RBP6.81□□□□□ -1.32
CSMD3-208ENST00000497026 LGR6Q9HBX8 967 aa6.81□□□□□ -1.32
CSMD3-208ENST00000497026 AP4E1Q9UPM8 1137 aa6.81□□□□□ -1.32
CSMD3-208ENST00000497026 PPIP5K1Q6PFW1 1433 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 ACEP12821 1306 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 AFF2P51816 1311 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 F13BP05160 661 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 LIG1P18858 919 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 PLCB3Q01970 1234 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.8□□□□□ -1.32
CSMD3-208ENST00000497026 MEX3CQ5U5Q3 659 aaKnown RBP6.8□□□□□ -1.32
CSMD3-208ENST00000497026 PRPF40BQ6NWY9 871 aaKnown RBP6.8□□□□□ -1.32
CSMD3-208ENST00000497026 DTHD1Q6ZMT9 781 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 DDX54Q8TDD1 881 aaKnown RBP6.8□□□□□ -1.32
CSMD3-208ENST00000497026 SETDB2Q96T68 719 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 CARD11Q9BXL7 1154 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 BCO2Q9BYV7 579 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 NLRP2Q9NX02 1062 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 MON2Q7Z3U7 1717 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 NRAPQ86VF7 1730 aa6.8□□□□□ -1.32
CSMD3-208ENST00000497026 ARHGEF10O15013 1369 aa6.79□□□□□ -1.32
CSMD3-208ENST00000497026 SLIT2O94813 1529 aa6.79□□□□□ -1.32
CSMD3-208ENST00000497026 NWD2Q9ULI1 1742 aa6.79□□□□□ -1.32
CSMD3-208ENST00000497026 ADAMTS4O75173 837 aa6.79□□□□□ -1.32
CSMD3-208ENST00000497026 NFICP08651 508 aa6.79□□□□□ -1.32
CSMD3-208ENST00000497026 ADMP35318 185 aa6.79□□□□□ -1.32
CSMD3-208ENST00000497026 PAOXQ6QHF9 649 aa6.79□□□□□ -1.32
CSMD3-208ENST00000497026 NXPE4Q6UWF7 544 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms