RNA–Protein interactions for RNA: ENST00000496081.5

HLA-A-208, Transcript of major histocompatibility complex, class I, A, human

Gene HLA-A, Length 1,786 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HLA-A-208	ENST00000496081	CTCFL	Q8NI51	663 aa	Predicted RBP	19.02	■□□□□ 0.64
HLA-A-208	ENST00000496081	RNF26	Q9BY78	433 aa	Predicted RBP	19.02	■□□□□ 0.64
HLA-A-208	ENST00000496081	SCAND2P	Q9GZW5	306 aa	Predicted RBP	19.02	■□□□□ 0.64
HLA-A-208	ENST00000496081	ZBTB12	Q9Y330	459 aa	Predicted RBP	19.02	■□□□□ 0.64
HLA-A-208	ENST00000496081	ELP1	O95163	1332 aa		19.02	■□□□□ 0.63
HLA-A-208	ENST00000496081	HLA-DOA	P06340	250 aa		19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	DEK	P35659	375 aa	Known RBP	19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	KIF23	Q02241	960 aa	Predicted RBP	19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	TCP10	Q12799	353 aa		19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	TMTC3	Q6ZXV5	915 aa		19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	SWAP70	Q9UH65	585 aa		19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	STX8	Q9UNK0	236 aa		19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	MYH8	P13535	1937 aa		19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	MYH6	P13533	1939 aa		19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	CXCL9	Q07325	125 aa		19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	LEO1	Q8WVC0	666 aa	Predicted RBP	19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	SPATA32	Q96LK8	384 aa		19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	TMEM47	Q9BQJ4	181 aa		19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	EHD4	Q9H223	541 aa		19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	DHX36	Q9H2U1	1008 aa	Known RBP	19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	CFAP45	Q9UL16	551 aa		19.01	■□□□□ 0.63
HLA-A-208	ENST00000496081	SIPA1L1	O43166	1804 aa		19	■□□□□ 0.63
HLA-A-208	ENST00000496081	DDTL	A6NHG4	134 aa	Predicted RBP	19	■□□□□ 0.63
HLA-A-208	ENST00000496081	KIF28P	B7ZC32	967 aa		19	■□□□□ 0.63
HLA-A-208	ENST00000496081	TRIM29	Q14134	588 aa		19	■□□□□ 0.63
HLA-A-208	ENST00000496081	SH3BP5L	Q7L8J4	393 aa		19	■□□□□ 0.63
HLA-A-208	ENST00000496081	MAP3K14	Q99558	947 aa		19	■□□□□ 0.63
HLA-A-208	ENST00000496081	RBM27	Q9P2N5	1060 aa	Known RBP	19	■□□□□ 0.63
HLA-A-208	ENST00000496081	HDAC9	Q9UKV0	1011 aa		19	■□□□□ 0.63
HLA-A-208	ENST00000496081	TAOK2	Q9UL54	1235 aa		19	■□□□□ 0.63
HLA-A-208	ENST00000496081	PLIN4	Q96Q06	1357 aa		19	■□□□□ 0.63
HLA-A-208	ENST00000496081	SRCAP	Q6ZRS2	3230 aa		19	■□□□□ 0.63
HLA-A-208	ENST00000496081	SPDYE2B	A6NHP3	402 aa		18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	PRPF3	O43395	683 aa	Known RBP	18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	SPDYE6	P0CI01	402 aa		18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	SHMT1	P34896	483 aa		18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	NOV	P48745	357 aa		18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	ATL3	Q6DD88	541 aa		18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	BRAP	Q7Z569	592 aa		18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	OGFOD1	Q8N543	542 aa		18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	SRBD1	Q8N5C6	995 aa	Known RBP	18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	AGBL3	Q8NEM8	1001 aa		18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	JDP2	Q8WYK2	163 aa		18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	CEP95	Q96GE4	821 aa		18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	TMEM63C	Q9P1W3	806 aa		18.99	■□□□□ 0.63
HLA-A-208	ENST00000496081	KIF5B	P33176	963 aa		18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	PKN1	Q16512	942 aa		18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	ZNF396	Q96N95	335 aa	Predicted RBP	18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	USP28	Q96RU2	1077 aa		18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081		V9GY48	417 aa	Predicted RBP	18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	CNTNAP5	Q8WYK1	1306 aa		18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	LTBP3	Q9NS15	1303 aa		18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	ENTPD3	O75355	529 aa		18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	SLURP2	P0DP57	97 aa		18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	AKR1B1	P15121	316 aa		18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	AKAP17A	Q02040	695 aa	Known RBP	18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	GRM4	Q14833	912 aa		18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	CIAPIN1	Q6FI81	312 aa		18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	FTO	Q9C0B1	505 aa	Known RBP eCLIP	18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	DNAJC18	Q9H819	358 aa		18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	PI4KB	Q9UBF8	816 aa		18.98	■□□□□ 0.63
HLA-A-208	ENST00000496081	IGKV6D-41	A0A0C4DH26	115 aa		18.97	■□□□□ 0.63
HLA-A-208	ENST00000496081	DLGAP5	Q15398	846 aa		18.97	■□□□□ 0.63
HLA-A-208	ENST00000496081	TPRN	Q4KMQ1	711 aa		18.97	■□□□□ 0.63
HLA-A-208	ENST00000496081	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	18.97	■□□□□ 0.63
HLA-A-208	ENST00000496081	ARFGEF1	Q9Y6D6	1849 aa		18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	hCG_1642624	A0A1W2PR95	340 aa		18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	MMP1	P03956	469 aa		18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	TOP1	P11387	765 aa	Known RBP	18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	CEBPZ	Q03701	1054 aa	Known RBP	18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	ZSCAN23	Q3MJ62	389 aa		18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	MYSM1	Q5VVJ2	828 aa		18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	MTMR4	Q9NYA4	1195 aa		18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	MAD2L2	Q9UI95	211 aa		18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	RCOR1	Q9UKL0	485 aa		18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	ATRNL1	Q5VV63	1379 aa		18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	U2AF2	P26368	475 aa	Known RBP eCLIP	18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	RASSF7	Q02833	373 aa		18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	STAG2	Q8N3U4	1231 aa		18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	KCNJ14	Q9UNX9	436 aa		18.96	■□□□□ 0.63
HLA-A-208	ENST00000496081	COL2A1	P02458	1487 aa	Predicted RBP	18.95	■□□□□ 0.62
HLA-A-208	ENST00000496081	GREB1L	Q9C091	1923 aa	Predicted RBP	18.95	■□□□□ 0.62
HLA-A-208	ENST00000496081	PRELP	P51888	382 aa		18.95	■□□□□ 0.62
HLA-A-208	ENST00000496081	FOXP4	Q8IVH2	680 aa	Predicted RBP	18.95	■□□□□ 0.62
HLA-A-208	ENST00000496081	MTMR14	Q8NCE2	650 aa		18.95	■□□□□ 0.62
HLA-A-208	ENST00000496081	SHISA4	Q96DD7	197 aa		18.95	■□□□□ 0.62
HLA-A-208	ENST00000496081	ZNF70	Q9UC06	446 aa	Predicted RBP	18.95	■□□□□ 0.62
HLA-A-208	ENST00000496081	BAZ2B	Q9UIF8	2168 aa	Known RBP	18.95	■□□□□ 0.62
HLA-A-208	ENST00000496081	CLRN2	A0PK11	232 aa		18.94	■□□□□ 0.62
HLA-A-208	ENST00000496081	FAM196B	A6NMK8	535 aa		18.94	■□□□□ 0.62
HLA-A-208	ENST00000496081	TNIP1	Q15025	636 aa		18.94	■□□□□ 0.62
HLA-A-208	ENST00000496081	PGBD1	Q96JS3	809 aa		18.94	■□□□□ 0.62
HLA-A-208	ENST00000496081	CCDC17	Q96LX7	622 aa		18.94	■□□□□ 0.62
HLA-A-208	ENST00000496081	RTEL1	Q9NZ71	1219 aa		18.94	■□□□□ 0.62
HLA-A-208	ENST00000496081	TMOD2	Q9NZR1	351 aa		18.94	■□□□□ 0.62
HLA-A-208	ENST00000496081	MTMR7	Q9Y216	660 aa		18.94	■□□□□ 0.62
HLA-A-208	ENST00000496081	PALM3	A6NDB9	673 aa	Predicted RBP	18.93	■□□□□ 0.62
HLA-A-208	ENST00000496081	GNAQ	P50148	359 aa		18.93	■□□□□ 0.62
HLA-A-208	ENST00000496081	GNL2	Q13823	731 aa	Known RBP	18.93	■□□□□ 0.62

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