RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 Q3C1V9 767 aa15.34■□□□□ 0.05
PTPRF-214ENST00000496043 CATSPERGQ6ZRH7 1159 aa15.34■□□□□ 0.05
PTPRF-214ENST00000496043 UNC93B1Q9H1C4 597 aa15.34■□□□□ 0.05
PTPRF-214ENST00000496043 TXNRD2Q9NNW7 524 aa15.34■□□□□ 0.05
PTPRF-214ENST00000496043 SLC4A4Q9Y6R1 1079 aa15.34■□□□□ 0.05
PTPRF-214ENST00000496043 MYH1P12882 1939 aa15.34■□□□□ 0.05
PTPRF-214ENST00000496043 USP17L12C9JPN9 530 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 USP17L21D6R901 530 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 SGPL1O95470 568 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 MAPK4P31152 587 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 RRP1P56182 461 aaKnown RBP15.33■□□□□ 0.04
PTPRF-214ENST00000496043 EVX2Q03828 476 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 C12orf60Q5U649 245 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 TMEM179Q6ZVK1 233 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 KBTBD3Q8NAB2 608 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 DYNLL2Q96FJ2 89 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 CCDC17Q96LX7 622 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 PAGR1Q9BTK6 254 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 PUS7LQ9H0K6 701 aaKnown RBP15.33■□□□□ 0.04
PTPRF-214ENST00000496043 RABGAP1Q9Y3P9 1069 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 ATAD5Q96QE3 1844 aa15.33■□□□□ 0.04
PTPRF-214ENST00000496043 PEX10O60683 326 aa15.32■□□□□ 0.04
PTPRF-214ENST00000496043 TFRCP02786 760 aaKnown RBP15.32■□□□□ 0.04
PTPRF-214ENST00000496043 CHGBP05060 677 aa15.32■□□□□ 0.04
PTPRF-214ENST00000496043 CDK8P49336 464 aa15.32■□□□□ 0.04
PTPRF-214ENST00000496043 ERVK-9P63128 1117 aa15.32■□□□□ 0.04
PTPRF-214ENST00000496043 ERVK-24P63145 666 aa15.32■□□□□ 0.04
PTPRF-214ENST00000496043 U2AF1L4Q8WU68 220 aaKnown RBP15.32■□□□□ 0.04
PTPRF-214ENST00000496043 NUDT12Q9BQG2 462 aa15.32■□□□□ 0.04
PTPRF-214ENST00000496043 TNRC18O15417 2968 aaPredicted RBP15.32■□□□□ 0.04
PTPRF-214ENST00000496043 HTTP42858 3142 aa15.31■□□□□ 0.04
PTPRF-214ENST00000496043 ERC2O15083 957 aa15.31■□□□□ 0.04
PTPRF-214ENST00000496043 RNF113AO15541 343 aaKnown RBP15.31■□□□□ 0.04
PTPRF-214ENST00000496043 ZFYP08048 801 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-214ENST00000496043 VCAM1P19320 739 aa15.31■□□□□ 0.04
PTPRF-214ENST00000496043 CCNA1P78396 465 aa15.31■□□□□ 0.04
PTPRF-214ENST00000496043 LRRFIP1Q32MZ4 808 aaKnown RBP15.31■□□□□ 0.04
PTPRF-214ENST00000496043 CTR9Q6PD62 1173 aa15.31■□□□□ 0.04
PTPRF-214ENST00000496043 SLC44A5Q8NCS7 719 aa15.31■□□□□ 0.04
PTPRF-214ENST00000496043 GCC1Q96CN9 775 aa15.31■□□□□ 0.04
PTPRF-214ENST00000496043 SHISA4Q96DD7 197 aa15.31■□□□□ 0.04
PTPRF-214ENST00000496043 STRBPQ96SI9 672 aaKnown RBP15.31■□□□□ 0.04
PTPRF-214ENST00000496043 RPAP3Q9H6T3 665 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-214ENST00000496043 CWC22Q9HCG8 908 aaKnown RBP15.31■□□□□ 0.04
PTPRF-214ENST00000496043 HOXC10Q9NYD6 342 aa15.31■□□□□ 0.04
PTPRF-214ENST00000496043 ZBTB47Q9UFB7 747 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-214ENST00000496043 LOC285556D6RIA3 1793 aa15.31■□□□□ 0.04
PTPRF-214ENST00000496043 CYP2D7A0A087X1C5 515 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 A0A1W2PRG0 241 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 MGAMO43451 1857 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 HMGCRP04035 888 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 CYP2B6P20813 491 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 COG2Q14746 738 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 TSHZ3Q63HK5 1081 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 TTC41PQ6P2S7 1318 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 POTEEQ6S8J3 1075 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 C16orf86Q6ZW13 317 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 RBBP6Q7Z6E9 1792 aaKnown RBP15.3■□□□□ 0.04
PTPRF-214ENST00000496043 PLEKHH3Q7Z736 793 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 TRMT44Q8IYL2 757 aaKnown RBP15.3■□□□□ 0.04
PTPRF-214ENST00000496043 APPBP2Q92624 585 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 ARHGEF10LQ9HCE6 1279 aa15.3■□□□□ 0.04
PTPRF-214ENST00000496043 GLRX3O76003 335 aaKnown RBP15.29■□□□□ 0.04
PTPRF-214ENST00000496043 XRCC5P13010 732 aaKnown RBP15.29■□□□□ 0.04
PTPRF-214ENST00000496043 AKR1B1P15121 316 aa15.29■□□□□ 0.04
PTPRF-214ENST00000496043 GIMAP6Q6P9H5 292 aa15.29■□□□□ 0.04
PTPRF-214ENST00000496043 LBX2Q6XYB7 198 aa15.29■□□□□ 0.04
PTPRF-214ENST00000496043 GPR142Q7Z601 462 aa15.29■□□□□ 0.04
PTPRF-214ENST00000496043 SOCS4Q8WXH5 440 aa15.29■□□□□ 0.04
PTPRF-214ENST00000496043 DPF3Q92784 378 aa15.29■□□□□ 0.04
PTPRF-214ENST00000496043 OSBP2Q969R2 916 aa15.29■□□□□ 0.04
PTPRF-214ENST00000496043 YTHDC1Q96MU7 727 aaKnown RBP15.29■□□□□ 0.04
PTPRF-214ENST00000496043 DEFB118Q96PH6 123 aa15.29■□□□□ 0.04
PTPRF-214ENST00000496043 CRBNQ96SW2 442 aa15.29■□□□□ 0.04
PTPRF-214ENST00000496043 PORCNQ9H237 461 aa15.29■□□□□ 0.04
PTPRF-214ENST00000496043 HMX1Q9NP08 348 aaPredicted RBP15.29■□□□□ 0.04
PTPRF-214ENST00000496043 RPTORQ8N122 1335 aa15.28■□□□□ 0.04
PTPRF-214ENST00000496043 GSG1L2A8MUP6 293 aa15.28■□□□□ 0.04
PTPRF-214ENST00000496043 CNMDO75829 334 aa15.28■□□□□ 0.04
PTPRF-214ENST00000496043 GNAT2P19087 354 aa15.28■□□□□ 0.04
PTPRF-214ENST00000496043 SBK1Q52WX2 424 aa15.28■□□□□ 0.04
PTPRF-214ENST00000496043 SIAH1Q8IUQ4 282 aa15.28■□□□□ 0.04
PTPRF-214ENST00000496043 HTATIP2Q9BUP3 242 aa15.28■□□□□ 0.04
PTPRF-214ENST00000496043 SH2D4AQ9H788 454 aa15.28■□□□□ 0.04
PTPRF-214ENST00000496043 KANSL2Q9H9L4 492 aa15.28■□□□□ 0.04
PTPRF-214ENST00000496043 PAK6Q9NQU5 681 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-214ENST00000496043 ARPP21Q9UBL0 812 aaPredicted RBP15.28■□□□□ 0.04
PTPRF-214ENST00000496043 TMX2Q9Y320 296 aa15.28■□□□□ 0.04
PTPRF-214ENST00000496043 SMIM22K7EJ46 135 aa15.27■□□□□ 0.04
PTPRF-214ENST00000496043 RGS2P41220 211 aa15.27■□□□□ 0.04
PTPRF-214ENST00000496043 ICA1Q05084 483 aa15.27■□□□□ 0.04
PTPRF-214ENST00000496043 MORN1Q5T089 497 aa15.27■□□□□ 0.04
PTPRF-214ENST00000496043 ANKRD45Q5TZF3 282 aa15.27■□□□□ 0.04
PTPRF-214ENST00000496043 WDR78Q5VTH9 848 aa15.27■□□□□ 0.04
PTPRF-214ENST00000496043 UBE2Q1Q7Z7E8 422 aa15.27■□□□□ 0.04
PTPRF-214ENST00000496043 LPAR1Q92633 364 aa15.27■□□□□ 0.04
PTPRF-214ENST00000496043 USP6NLQ92738 828 aa15.27■□□□□ 0.04
PTPRF-214ENST00000496043 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.27■□□□□ 0.049e-6■■□□□ 13.2
PTPRF-214ENST00000496043 MKNK2Q9HBH9 465 aa15.27■□□□□ 0.04
PTPRF-214ENST00000496043 BTBD7Q9P203 1132 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms