RNA–Protein interactions for RNA: ENST00000494654.1

MDC1-208, Transcript of mediator of DNA damage checkpoint 1, human

TSL 3

Gene MDC1, Length 148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MDC1-208	ENST00000494654	ZNF483	Q8TF39	744 aa	Predicted RBP	3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	RUBCN	Q92622	972 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	HPS1	Q92902	700 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	SMARCC1	Q92922	1105 aa	Predicted RBP	3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	SPATA32	Q96LK8	384 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	PARD6B	Q9BYG5	372 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	IRX2	Q9BZI1	471 aa	Predicted RBP	3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	TM6SF1	Q9BZW5	370 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	NAT10	Q9H0A0	1025 aa	Known RBP	3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	TMX4	Q9H1E5	349 aa	Predicted RBP	3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	VCPKMT	Q9H867	229 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	ANO2	Q9NQ90	1003 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	BATF3	Q9NR55	127 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	TRMT1	Q9NXH9	659 aa	Known RBP	3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	ODF2L	Q9ULJ1	636 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	MYO6	Q9UM54	1294 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	LIMCH1	Q9UPQ0	1083 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	FAM169A	Q9Y6X4	670 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	ZC3H4	Q9UPT8	1303 aa	Known RBP	3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	ROBO1	Q9Y6N7	1651 aa		3.11	□□□□□ -1.91
MDC1-208	ENST00000494654	BCL9	O00512	1426 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	KIAA1551	Q9HCM1	1747 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	XIRP1	Q702N8	1843 aa	Known RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	VPS37C	A5D8V6	355 aa	Predicted RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	GOLGA6L4	A6NEF3	574 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	FAM187A	A6NFU0	413 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	POM121C	A8CG34	1229 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	BECN2	A8MW95	431 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	PDLIM1	O00151	329 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	EXOC5	O00471	708 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	NPHP1	O15259	732 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	EIF3H	O15372	352 aa	Known RBP eCLIP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	CBFA2T2	O43439	604 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	AHCYL1	O43865	530 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	KIN	O60870	393 aa	Known RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	CUTA	O60888	179 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	RASSF9	O75901	435 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	RGS20	O76081	388 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	KIAA0754	O94854	1291 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	NR3C2	P08235	984 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	NBPF7	P0C2Y1	421 aa	Predicted RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	U2AF1L5	P0DN76	240 aa	Predicted RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	EZR	P15311	586 aa	Known RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	PAX7	P23759	505 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	ARID4A	P29374	1257 aa	Predicted RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	SLC8A1	P32418	973 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	GRM5	P41594	1212 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	MAGEA8	P43361	318 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	MTHFS	P49914	203 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	RAB27A	P51159	221 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	RPS6KA3	P51812	740 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	CLNS1A	P54105	237 aa	Known RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	WNT7B	P56706	349 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	CHMP4BP1	P59074	171 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	U2AF1	Q01081	240 aa	Known RBP eCLIP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	IFFO1	Q0D2I5	559 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	PPFIA1	Q13136	1202 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	GNL2	Q13823	731 aa	Known RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	DCTN1	Q14203	1278 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	CASP8	Q14790	479 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	AGER	Q15109	404 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	RGL3	Q3MIN7	710 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	ERFE	Q4G0M1	354 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	CEP85L	Q5SZL2	805 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	FBXW10	Q5XX13	1052 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	TTC19	Q6DKK2	380 aa	Predicted RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	WDR93	Q6P2C0	686 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	TLDC1	Q6P9B6	456 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	CWC27	Q6UX04	472 aa	Known RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	FOXD4L3	Q6VB84	417 aa	Predicted RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	MICALCL	Q6ZW33	695 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	RUFY3	Q7L099	469 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	CDC37L1	Q7L3B6	337 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	TMC6	Q7Z403	805 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	ANKLE2	Q86XL3	938 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	TMEM139	Q8IV31	216 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	MFN1	Q8IWA4	741 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	CCDC83	Q8IWF9	413 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	RBM12B	Q8IXT5	1001 aa	Known RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	CKAP2L	Q8IYA6	745 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	AOPEP	Q8N6M6	819 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	DRAXIN	Q8NBI3	349 aa	Predicted RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	ARMC2	Q8NEN0	867 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	ADAM32	Q8TC27	787 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	MICAL1	Q8TDZ2	1067 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	OTUD7A	Q8TE49	926 aa	Predicted RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	LEO1	Q8WVC0	666 aa	Predicted RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	KCNB2	Q92953	911 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	HOOK2	Q96ED9	719 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	BORCS6	Q96GS4	357 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	JPH2	Q9BR39	696 aa	Predicted RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	MMTAG2	Q9BU76	263 aa	Known RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	UPF3B	Q9BZI7	483 aa	Known RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	ANKZF1	Q9H8Y5	726 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	ACTR5	Q9H9F9	607 aa	Predicted RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	ZCCHC17	Q9NP64	241 aa	Known RBP	3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	STAP2	Q9UGK3	403 aa		3.1	□□□□□ -1.91
MDC1-208	ENST00000494654	GGA2	Q9UJY4	613 aa		3.1	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms