RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 IFIT1BQ5T764 474 aaKnown RBP14.82□□□□□ -0.04
VPS52-220ENST00000493674 CRACR2BQ8N4Y2 399 aaPredicted RBP14.82□□□□□ -0.04
VPS52-220ENST00000493674 NSUN7Q8NE18 718 aaKnown RBP14.82□□□□□ -0.04
VPS52-220ENST00000493674 CHMP4CQ96CF2 233 aa14.82□□□□□ -0.04
VPS52-220ENST00000493674 NCOA5Q9HCD5 579 aaKnown RBP14.82□□□□□ -0.04
VPS52-220ENST00000493674 FOXD4L1Q9NU39 408 aa14.82□□□□□ -0.04
VPS52-220ENST00000493674 SLC12A7Q9Y666 1083 aa14.82□□□□□ -0.04
VPS52-220ENST00000493674 FAM196BA6NMK8 535 aa14.81□□□□□ -0.04
VPS52-220ENST00000493674 RRP1BQ14684 758 aaKnown RBP14.81□□□□□ -0.04
VPS52-220ENST00000493674 PPP2R5BQ15173 497 aa14.81□□□□□ -0.04
VPS52-220ENST00000493674 NTRK3Q16288 839 aa14.81□□□□□ -0.04
VPS52-220ENST00000493674 CEP95Q96GE4 821 aa14.81□□□□□ -0.04
VPS52-220ENST00000493674 MAP3K14Q99558 947 aa14.81□□□□□ -0.04
VPS52-220ENST00000493674 CHMP5Q9NZZ3 219 aa14.81□□□□□ -0.04
VPS52-220ENST00000493674 PPP2R3BQ9Y5P8 575 aa14.81□□□□□ -0.04
VPS52-220ENST00000493674 TOMM70O94826 608 aa14.8□□□□□ -0.04
VPS52-220ENST00000493674 CDC27P30260 824 aa14.8□□□□□ -0.04
VPS52-220ENST00000493674 GUCY1A2P33402 732 aa14.8□□□□□ -0.04
VPS52-220ENST00000493674 METAP2P50579 478 aaKnown RBP eCLIP14.8□□□□□ -0.04
VPS52-220ENST00000493674 CCT2P78371 535 aaKnown RBP14.8□□□□□ -0.04
VPS52-220ENST00000493674 ANGEL2Q5VTE6 544 aaKnown RBP14.8□□□□□ -0.04
VPS52-220ENST00000493674 NFXL1Q6ZNB6 911 aa14.8□□□□□ -0.04
VPS52-220ENST00000493674 MICU3Q86XE3 530 aa14.8□□□□□ -0.04
VPS52-220ENST00000493674 RBM46Q8TBY0 533 aaKnown RBP14.8□□□□□ -0.04
VPS52-220ENST00000493674 DEFB129Q9H1M3 183 aa14.8□□□□□ -0.04
VPS52-220ENST00000493674 RRAGCQ9HB90 399 aa14.8□□□□□ -0.04
VPS52-220ENST00000493674 MTMR4Q9NYA4 1195 aa14.8□□□□□ -0.04
VPS52-220ENST00000493674 GGA3Q9NZ52 723 aa14.8□□□□□ -0.04
VPS52-220ENST00000493674 SMC3Q9UQE7 1217 aa14.8□□□□□ -0.04
VPS52-220ENST00000493674 RLFQ13129 1914 aa14.8□□□□□ -0.04
VPS52-220ENST00000493674 GOLGA8AA7E2F4 631 aa14.79□□□□□ -0.04
VPS52-220ENST00000493674 POTECB2RU33 542 aa14.79□□□□□ -0.04
VPS52-220ENST00000493674 LOC285556D6RIA3 1793 aa14.79□□□□□ -0.04
VPS52-220ENST00000493674 DHX16O60231 1041 aaKnown RBP14.79□□□□□ -0.04
VPS52-220ENST00000493674 JAK2O60674 1132 aa14.79□□□□□ -0.04
VPS52-220ENST00000493674 CALM1P0DP23 149 aa14.79□□□□□ -0.04
VPS52-220ENST00000493674 CALM2P0DP24 149 aa14.79□□□□□ -0.04
VPS52-220ENST00000493674 CALM3P0DP25 149 aa14.79□□□□□ -0.04
VPS52-220ENST00000493674 GJB2P29033 226 aa14.79□□□□□ -0.04
VPS52-220ENST00000493674 CERKLQ49MI3 558 aaPredicted RBP14.79□□□□□ -0.04
VPS52-220ENST00000493674 USP50Q70EL3 339 aaPredicted RBP14.79□□□□□ -0.04
VPS52-220ENST00000493674 CATIPQ7Z7H3 387 aa14.79□□□□□ -0.04
VPS52-220ENST00000493674 TMEM47Q9BQJ4 181 aa14.79□□□□□ -0.04
VPS52-220ENST00000493674 MYL10Q9BUA6 226 aa14.79□□□□□ -0.04
VPS52-220ENST00000493674 STK36Q9NRP7 1315 aa14.79□□□□□ -0.04
VPS52-220ENST00000493674 PTPDC1A2A3K4 754 aa14.78□□□□□ -0.04
VPS52-220ENST00000493674 PHF20L1A8MW92 1017 aa14.78□□□□□ -0.04
VPS52-220ENST00000493674 TOP1P11387 765 aaKnown RBP14.78□□□□□ -0.04
VPS52-220ENST00000493674 RXRAP19793 462 aa14.78□□□□□ -0.04
VPS52-220ENST00000493674 JAG1P78504 1218 aa14.78□□□□□ -0.04
VPS52-220ENST00000493674 HMGN5P82970 282 aaKnown RBP14.78□□□□□ -0.04
VPS52-220ENST00000493674 RTN1Q16799 776 aa14.78□□□□□ -0.04
VPS52-220ENST00000493674 SHROOM1Q2M3G4 852 aaPredicted RBP14.78□□□□□ -0.04
VPS52-220ENST00000493674 PPP4R3BQ5MIZ7 849 aa14.78□□□□□ -0.04
VPS52-220ENST00000493674 SYNE3Q6ZMZ3 975 aa14.78□□□□□ -0.04
VPS52-220ENST00000493674 TMEM179Q6ZVK1 233 aa14.78□□□□□ -0.04
VPS52-220ENST00000493674 RAB11FIP4Q86YS3 637 aa14.78□□□□□ -0.04
VPS52-220ENST00000493674 FANCBQ8NB91 859 aa14.78□□□□□ -0.04
VPS52-220ENST00000493674 PNMA1Q8ND90 353 aa14.78□□□□□ -0.04
VPS52-220ENST00000493674 TRIM34Q9BYJ4 488 aa14.78□□□□□ -0.04
VPS52-220ENST00000493674 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.78□□□□□ -0.04
VPS52-220ENST00000493674 FDPSP14324 419 aaKnown RBP14.77□□□□□ -0.05
VPS52-220ENST00000493674 IFNAR1P17181 557 aa14.77□□□□□ -0.05
VPS52-220ENST00000493674 EPHX2P34913 555 aa14.77□□□□□ -0.05
VPS52-220ENST00000493674 ADD1P35611 737 aaKnown RBP14.77□□□□□ -0.05
VPS52-220ENST00000493674 FUT2Q10981 343 aa14.77□□□□□ -0.05
VPS52-220ENST00000493674 FSTL1Q12841 308 aa14.77□□□□□ -0.05
VPS52-220ENST00000493674 GRM4Q14833 912 aa14.77□□□□□ -0.05
VPS52-220ENST00000493674 RAB3GAP1Q15042 981 aa14.77□□□□□ -0.05
VPS52-220ENST00000493674 ABCB5Q2M3G0 1257 aa14.77□□□□□ -0.05
VPS52-220ENST00000493674 PNMA8AQ86V59 439 aaPredicted RBP14.77□□□□□ -0.05
VPS52-220ENST00000493674 ZC3H15Q8WU90 426 aaKnown RBP14.77□□□□□ -0.05
VPS52-220ENST00000493674 MKL1Q969V6 931 aa14.77□□□□□ -0.05
VPS52-220ENST00000493674 KAT14Q9H8E8 782 aa14.77□□□□□ -0.05
VPS52-220ENST00000493674 RBM28Q9NW13 759 aaKnown RBP14.77□□□□□ -0.05
VPS52-220ENST00000493674 NYAP2Q9P242 653 aa14.77□□□□□ -0.05
VPS52-220ENST00000493674 NAP1L2Q9ULW6 460 aaPredicted RBP14.77□□□□□ -0.05
VPS52-220ENST00000493674 SCAF8Q9UPN6 1271 aaKnown RBP14.77□□□□□ -0.05
VPS52-220ENST00000493674 ZDHHC9Q9Y397 364 aa14.77□□□□□ -0.05
VPS52-220ENST00000493674 COL11A1P12107 1806 aaPredicted RBP14.77□□□□□ -0.05
VPS52-220ENST00000493674 RBBP6Q7Z6E9 1792 aaKnown RBP14.77□□□□□ -0.05
VPS52-220ENST00000493674 SMCHD1A6NHR9 2005 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 CCDC196A0A1B0GTZ2 297 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 BRD1O95696 1058 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 TTLL1O95922 423 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 SNHG28P0DPA3 235 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 C1QTNF8P60827 252 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 NUCB2P80303 420 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 PKP1Q13835 747 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 NBPF12Q5TAG4 269 aaPredicted RBP14.76□□□□□ -0.05
VPS52-220ENST00000493674 NBPF11Q86T75 865 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 CLEC10AQ8IUN9 316 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 SIAH1Q8IUQ4 282 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 SMC1BQ8NDV3 1235 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 RGS22Q8NE09 1264 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 TAF1DQ9H5J8 278 aaPredicted RBP14.76□□□□□ -0.05
VPS52-220ENST00000493674 KANSL2Q9H9L4 492 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 GINM1Q9NU53 330 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 ZNF112Q9UJU3 913 aa14.76□□□□□ -0.05
VPS52-220ENST00000493674 ZBTB21Q9ULJ3 1066 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms