RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 USP17L19D6RCP7 530 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 USP17L20D6RJB6 530 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 SRGAP3O43295 1099 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 UQCRFS1P1P0C7P4 283 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 USP17L24Q0WX57 530 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 SNX17Q15036 470 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 SHROOM1Q2M3G4 852 aaPredicted RBP17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 GORABQ5T7V8 394 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 ATF7IPQ6VMQ6 1270 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 MAPKAPK5Q8IW41 473 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 FAM9BQ8IZU0 186 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 MEIS3Q99687 375 aa17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 API5Q9BZZ5 524 aaKnown RBP17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 AATFQ9NY61 560 aaKnown RBP eCLIP17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.52■□□□□ 0.4
PRPF40A-211ENST00000493468 CYBAP13498 195 aa17.51■□□□□ 0.39
PRPF40A-211ENST00000493468 ATP2B2Q01814 1243 aa17.51■□□□□ 0.39
PRPF40A-211ENST00000493468 C9orf50Q5SZB4 431 aa17.51■□□□□ 0.39
PRPF40A-211ENST00000493468 NAA16Q6N069 864 aaPredicted RBP17.51■□□□□ 0.39
PRPF40A-211ENST00000493468 ARRDC4Q8NCT1 418 aa17.51■□□□□ 0.39
PRPF40A-211ENST00000493468 TGFBRAP1Q8WUH2 860 aa17.51■□□□□ 0.39
PRPF40A-211ENST00000493468 TTYH1Q9H313 450 aaPredicted RBP17.51■□□□□ 0.39
PRPF40A-211ENST00000493468 IVNS1ABPQ9Y6Y0 642 aa17.51■□□□□ 0.39
PRPF40A-211ENST00000493468 A0A0G2JMZ2 1700 aa17.5■□□□□ 0.39
PRPF40A-211ENST00000493468 HLA-DOAP06340 250 aa17.5■□□□□ 0.39
PRPF40A-211ENST00000493468 CNGA1P29973 690 aa17.5■□□□□ 0.39
PRPF40A-211ENST00000493468 USP14P54578 494 aa17.5■□□□□ 0.39
PRPF40A-211ENST00000493468 SLFN5Q08AF3 891 aa17.5■□□□□ 0.39
PRPF40A-211ENST00000493468 SLC39A5Q6ZMH5 540 aa17.5■□□□□ 0.39
PRPF40A-211ENST00000493468 CATSPERGQ6ZRH7 1159 aa17.5■□□□□ 0.39
PRPF40A-211ENST00000493468 TRPV1Q8NER1 839 aa17.5■□□□□ 0.39
PRPF40A-211ENST00000493468 MYLIPQ8WY64 445 aa17.5■□□□□ 0.39
PRPF40A-211ENST00000493468 PALD1Q9ULE6 856 aa17.5■□□□□ 0.39
PRPF40A-211ENST00000493468 ATP11BQ9Y2G3 1177 aa17.5■□□□□ 0.39
PRPF40A-211ENST00000493468 GNAI3P08754 354 aa17.49■□□□□ 0.39
PRPF40A-211ENST00000493468 CT47B1P0C2W7 299 aaPredicted RBP17.49■□□□□ 0.39
PRPF40A-211ENST00000493468 FOSL2P15408 326 aa17.49■□□□□ 0.39
PRPF40A-211ENST00000493468 C1orf53Q5VUE5 145 aa17.49■□□□□ 0.39
PRPF40A-211ENST00000493468 OLFML2BQ68BL8 750 aa17.49■□□□□ 0.39
PRPF40A-211ENST00000493468 NPLOC4Q8TAT6 608 aa17.49■□□□□ 0.39
PRPF40A-211ENST00000493468 KIAA1683Q9H0B3 1180 aa17.49■□□□□ 0.39
PRPF40A-211ENST00000493468 KBTBD13C9JR72 458 aa17.48■□□□□ 0.39
PRPF40A-211ENST00000493468 GH2P01242 217 aa17.48■□□□□ 0.39
PRPF40A-211ENST00000493468 VCAM1P19320 739 aa17.48■□□□□ 0.39
PRPF40A-211ENST00000493468 CYP2C19P33261 490 aa17.48■□□□□ 0.39
PRPF40A-211ENST00000493468 WDR78Q5VTH9 848 aa17.48■□□□□ 0.39
PRPF40A-211ENST00000493468 TATDN1Q6P1N9 297 aa17.48■□□□□ 0.39
PRPF40A-211ENST00000493468 ADGRA1Q86SQ6 560 aa17.48■□□□□ 0.39
PRPF40A-211ENST00000493468 FEZ1Q99689 392 aa17.48■□□□□ 0.39
PRPF40A-211ENST00000493468 PDLIM7Q9NR12 457 aa17.48■□□□□ 0.39
PRPF40A-211ENST00000493468 BTBD7Q9P203 1132 aa17.48■□□□□ 0.39
PRPF40A-211ENST00000493468 NOB1Q9ULX3 412 aaKnown RBP17.48■□□□□ 0.39
PRPF40A-211ENST00000493468 NDUFB9Q9Y6M9 179 aa17.48■□□□□ 0.39
PRPF40A-211ENST00000493468 GJC2Q5T442 439 aaPredicted RBP17.47■□□□□ 0.39
PRPF40A-211ENST00000493468 BADQ92934 168 aa17.47■□□□□ 0.39
PRPF40A-211ENST00000493468 EHD4Q9H223 541 aa17.47■□□□□ 0.39
PRPF40A-211ENST00000493468 PRDM5Q9NQX1 630 aaPredicted RBP17.47■□□□□ 0.39
PRPF40A-211ENST00000493468 SPDYE16A6NNV3 312 aaPredicted RBP17.46■□□□□ 0.39
PRPF40A-211ENST00000493468 SEPT4O43236 478 aa17.46■□□□□ 0.39
PRPF40A-211ENST00000493468 STRNO43815 780 aa17.46■□□□□ 0.39
PRPF40A-211ENST00000493468 TRIM60Q495X7 471 aa17.46■□□□□ 0.39
PRPF40A-211ENST00000493468 ZYXQ15942 572 aaKnown RBP17.45■□□□□ 0.38
PRPF40A-211ENST00000493468 CERS3Q8IU89 383 aa17.45■□□□□ 0.38
PRPF40A-211ENST00000493468 GPR108Q9NPR9 543 aa17.45■□□□□ 0.38
PRPF40A-211ENST00000493468 SAP30BPQ9UHR5 308 aaKnown RBP17.45■□□□□ 0.38
PRPF40A-211ENST00000493468 TRIM43BA6NCK2 446 aa17.44■□□□□ 0.38
PRPF40A-211ENST00000493468 TJAP1Q5JTD0 557 aa17.44■□□□□ 0.38
PRPF40A-211ENST00000493468 DPP9Q86TI2 863 aa17.44■□□□□ 0.38
PRPF40A-211ENST00000493468 SHCBP1Q8NEM2 672 aa17.44■□□□□ 0.38
PRPF40A-211ENST00000493468 TRIM43Q96BQ3 446 aaPredicted RBP17.44■□□□□ 0.38
PRPF40A-211ENST00000493468 ZNF512BQ96KM6 892 aaPredicted RBP17.44■□□□□ 0.38
PRPF40A-211ENST00000493468 SERPINB13Q9UIV8 391 aa17.44■□□□□ 0.38
PRPF40A-211ENST00000493468 ZNFX1Q9P2E3 1918 aaKnown RBP17.43■□□□□ 0.38
PRPF40A-211ENST00000493468 PARP14Q460N5 1801 aa17.43■□□□□ 0.38
PRPF40A-211ENST00000493468 CYP2E1P05181 493 aaPredicted RBP17.43■□□□□ 0.38
PRPF40A-211ENST00000493468 ADORA2AP29274 412 aa17.43■□□□□ 0.38
PRPF40A-211ENST00000493468 G3BP1Q13283 466 aaKnown RBP eCLIP17.43■□□□□ 0.386e-8■□□□□ 11.3
PRPF40A-211ENST00000493468 TTC39AQ5SRH9 613 aa17.43■□□□□ 0.38
PRPF40A-211ENST00000493468 TRMT2AQ8IZ69 625 aaKnown RBP17.43■□□□□ 0.38
PRPF40A-211ENST00000493468 ARHGAP45Q92619 1136 aa17.43■□□□□ 0.38
PRPF40A-211ENST00000493468 RPAP3Q9H6T3 665 aaPredicted RBP17.43■□□□□ 0.38
PRPF40A-211ENST00000493468 SNRKQ9NRH2 765 aa17.43■□□□□ 0.38
PRPF40A-211ENST00000493468 SMCHD1A6NHR9 2005 aa17.42■□□□□ 0.38
PRPF40A-211ENST00000493468 ADCYAP1R1P41586 468 aa17.42■□□□□ 0.38
PRPF40A-211ENST00000493468 RAB3GAP1Q15042 981 aa17.42■□□□□ 0.38
PRPF40A-211ENST00000493468 LRRC41Q15345 812 aa17.42■□□□□ 0.38
PRPF40A-211ENST00000493468 ABCB5Q2M3G0 1257 aa17.42■□□□□ 0.38
PRPF40A-211ENST00000493468 CCDC158Q5M9N0 1113 aa17.42■□□□□ 0.38
PRPF40A-211ENST00000493468 SH3RF1Q7Z6J0 888 aa17.42■□□□□ 0.38
PRPF40A-211ENST00000493468 ACER1Q8TDN7 264 aa17.42■□□□□ 0.38
PRPF40A-211ENST00000493468 RNPC3Q96LT9 517 aaKnown RBP17.42■□□□□ 0.38
PRPF40A-211ENST00000493468 MOV10L1Q9BXT6 1211 aaKnown RBP17.42■□□□□ 0.38
PRPF40A-211ENST00000493468 SLC5A4Q9NY91 659 aa17.42■□□□□ 0.38
PRPF40A-211ENST00000493468 TACC3Q9Y6A5 838 aa17.42■□□□□ 0.38
PRPF40A-211ENST00000493468 NAV1Q8NEY1 1877 aa17.41■□□□□ 0.38
PRPF40A-211ENST00000493468 ROBO3Q96MS0 1386 aa17.41■□□□□ 0.38
PRPF40A-211ENST00000493468 TNFRSF10AO00220 468 aa17.41■□□□□ 0.38
PRPF40A-211ENST00000493468 DYNLL1P63167 89 aaKnown RBP17.41■□□□□ 0.38
PRPF40A-211ENST00000493468 CERKLQ49MI3 558 aaPredicted RBP17.41■□□□□ 0.38
PRPF40A-211ENST00000493468 TMED8Q6PL24 325 aaPredicted RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms