RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 EDC3Q96F86 508 aaKnown RBP16.06■□□□□ 0.16
HDAC3-213ENST00000492506 C12orf42Q96LP6 360 aa16.06■□□□□ 0.16
HDAC3-213ENST00000492506 SENP6Q9GZR1 1112 aaPredicted RBP16.06■□□□□ 0.16
HDAC3-213ENST00000492506 SNRKQ9NRH2 765 aa16.06■□□□□ 0.16
HDAC3-213ENST00000492506 PNMA6EA0A0J9YXQ4 647 aa16.05■□□□□ 0.16
HDAC3-213ENST00000492506 HOXC6P09630 235 aa16.05■□□□□ 0.16
HDAC3-213ENST00000492506 PLCG2P16885 1265 aa16.05■□□□□ 0.16
HDAC3-213ENST00000492506 CCAR1Q8IX12 1150 aaKnown RBP16.05■□□□□ 0.16
HDAC3-213ENST00000492506 CRACR2BQ8N4Y2 399 aaPredicted RBP16.05■□□□□ 0.16
HDAC3-213ENST00000492506 FAM161BQ96MY7 647 aa16.05■□□□□ 0.16
HDAC3-213ENST00000492506 NOL10Q9BSC4 688 aaKnown RBP16.05■□□□□ 0.16
HDAC3-213ENST00000492506 DDX20Q9UHI6 824 aaKnown RBP16.05■□□□□ 0.16
HDAC3-213ENST00000492506 RABGAP1Q9Y3P9 1069 aa16.05■□□□□ 0.16
HDAC3-213ENST00000492506 NDUFB9Q9Y6M9 179 aa16.05■□□□□ 0.16
HDAC3-213ENST00000492506 ZNF236Q9UL36 1845 aa16.05■□□□□ 0.16
HDAC3-213ENST00000492506 MUC3AQ02505 3323 aa16.04■□□□□ 0.16
HDAC3-213ENST00000492506 CYP2E1P05181 493 aaPredicted RBP16.04■□□□□ 0.16
HDAC3-213ENST00000492506 PTPREP23469 700 aa16.04■□□□□ 0.16
HDAC3-213ENST00000492506 TATDN1Q6P1N9 297 aa16.04■□□□□ 0.16
HDAC3-213ENST00000492506 TRPV1Q8NER1 839 aa16.04■□□□□ 0.16
HDAC3-213ENST00000492506 ARHGAP45Q92619 1136 aa16.04■□□□□ 0.16
HDAC3-213ENST00000492506 LPAR1Q92633 364 aa16.04■□□□□ 0.16
HDAC3-213ENST00000492506 SAP30BPQ9UHR5 308 aaKnown RBP16.04■□□□□ 0.16
HDAC3-213ENST00000492506 ZNFX1Q9P2E3 1918 aaKnown RBP16.04■□□□□ 0.16
HDAC3-213ENST00000492506 SLC15A5A6NIM6 579 aa16.03■□□□□ 0.16
HDAC3-213ENST00000492506 GH2P01242 217 aa16.03■□□□□ 0.16
HDAC3-213ENST00000492506 RARSP54136 660 aaKnown RBP16.03■□□□□ 0.16
HDAC3-213ENST00000492506 ATN1P54259 1190 aaPredicted RBP16.03■□□□□ 0.16
HDAC3-213ENST00000492506 GRB14Q14449 540 aa16.03■□□□□ 0.16
HDAC3-213ENST00000492506 MFSD14CQ5VZR4 134 aa16.03■□□□□ 0.16
HDAC3-213ENST00000492506 LBX2Q6XYB7 198 aa16.03■□□□□ 0.16
HDAC3-213ENST00000492506 CATSPERGQ6ZRH7 1159 aa16.03■□□□□ 0.16
HDAC3-213ENST00000492506 NPLOC4Q8TAT6 608 aa16.03■□□□□ 0.16
HDAC3-213ENST00000492506 LBHD1Q9BQE6 289 aaPredicted RBP16.03■□□□□ 0.16
HDAC3-213ENST00000492506 BTBD7Q9P203 1132 aa16.03■□□□□ 0.16
HDAC3-213ENST00000492506 A0A0G2JMZ2 1700 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 SMCHD1A6NHR9 2005 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 USP17L15C9J2P7 530 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 USP17L13C9JLJ4 530 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 USP17L11C9JVI0 530 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 USP17L18D6R9N7 530 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 USP17L22D6RA61 530 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 USP17L17D6RBQ6 530 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 USP17L19D6RCP7 530 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 USP17L20D6RJB6 530 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 DNM1LO00429 736 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 GLRX3O76003 335 aaKnown RBP16.02■□□□□ 0.16
HDAC3-213ENST00000492506 DYNLL1P63167 89 aaKnown RBP16.02■□□□□ 0.16
HDAC3-213ENST00000492506 USP17L24Q0WX57 530 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 G3BP1Q13283 466 aaKnown RBP eCLIP16.02■□□□□ 0.16
HDAC3-213ENST00000492506 IL27Q8NEV9 243 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 DBNDD2Q9BQY9 259 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 TRIM34Q9BYJ4 488 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 GPR108Q9NPR9 543 aa16.02■□□□□ 0.16
HDAC3-213ENST00000492506 TTC28Q96AY4 2481 aa16.02■□□□□ 0.15
HDAC3-213ENST00000492506 PARP14Q460N5 1801 aa16.01■□□□□ 0.15
HDAC3-213ENST00000492506 MSCO60682 206 aa16.01■□□□□ 0.15
HDAC3-213ENST00000492506 CYP2C19P33261 490 aa16.01■□□□□ 0.15
HDAC3-213ENST00000492506 RTP1P59025 263 aa16.01■□□□□ 0.15
HDAC3-213ENST00000492506 CCNA1P78396 465 aa16.01■□□□□ 0.15
HDAC3-213ENST00000492506 ZYXQ15942 572 aaKnown RBP16.01■□□□□ 0.15
HDAC3-213ENST00000492506 TNNI3KQ59H18 835 aa16.01■□□□□ 0.15
HDAC3-213ENST00000492506 ACER1Q8TDN7 264 aa16.01■□□□□ 0.15
HDAC3-213ENST00000492506 ZNF512BQ96KM6 892 aaPredicted RBP16.01■□□□□ 0.15
HDAC3-213ENST00000492506 CDX2Q99626 313 aaPredicted RBP16.01■□□□□ 0.15
HDAC3-213ENST00000492506 KIAA1683Q9H0B3 1180 aa16.01■□□□□ 0.15
HDAC3-213ENST00000492506 PIH1D3Q9NQM4 214 aaKnown RBP16.01■□□□□ 0.15
HDAC3-213ENST00000492506 FPGT-TNNI3KV9GXZ4 949 aa16.01■□□□□ 0.15
HDAC3-213ENST00000492506 IGSF3O75054 1194 aa16■□□□□ 0.15
HDAC3-213ENST00000492506 GNAI2P04899 355 aa16■□□□□ 0.15
HDAC3-213ENST00000492506 HLA-DOAP06340 250 aa16■□□□□ 0.15
HDAC3-213ENST00000492506 CYBAP13498 195 aa16■□□□□ 0.15
HDAC3-213ENST00000492506 VCAM1P19320 739 aa16■□□□□ 0.15
HDAC3-213ENST00000492506 ZAP70P43403 619 aa16■□□□□ 0.15
HDAC3-213ENST00000492506 HNRNPUQ00839 825 aaKnown RBP eCLIP16■□□□□ 0.15
HDAC3-213ENST00000492506 ATP2B2Q01814 1243 aa16■□□□□ 0.15
HDAC3-213ENST00000492506 SHHQ15465 462 aa16■□□□□ 0.15
HDAC3-213ENST00000492506 TTC39AQ5SRH9 613 aa16■□□□□ 0.15
HDAC3-213ENST00000492506 C9orf50Q5SZB4 431 aa16■□□□□ 0.15
HDAC3-213ENST00000492506 ZNF697Q5TEC3 545 aa16■□□□□ 0.15
HDAC3-213ENST00000492506 CWC22Q9HCG8 908 aaKnown RBP16■□□□□ 0.15
HDAC3-213ENST00000492506 DAXXQ9UER7 740 aaPredicted RBP16■□□□□ 0.15
HDAC3-213ENST00000492506 TNNQ9UQP3 1299 aa16■□□□□ 0.15
HDAC3-213ENST00000492506 SPDYE16A6NNV3 312 aaPredicted RBP15.99■□□□□ 0.15
HDAC3-213ENST00000492506 CNGA1P29973 690 aa15.99■□□□□ 0.15
HDAC3-213ENST00000492506 GJC2Q5T442 439 aaPredicted RBP15.99■□□□□ 0.15
HDAC3-213ENST00000492506 WDR78Q5VTH9 848 aa15.99■□□□□ 0.15
HDAC3-213ENST00000492506 ATF7IPQ6VMQ6 1270 aa15.99■□□□□ 0.15
HDAC3-213ENST00000492506 SLC39A5Q6ZMH5 540 aa15.99■□□□□ 0.15
HDAC3-213ENST00000492506 FEZ1Q99689 392 aa15.99■□□□□ 0.15
HDAC3-213ENST00000492506 EHD4Q9H223 541 aa15.99■□□□□ 0.15
HDAC3-213ENST00000492506 SEMA6BQ9H3T3 888 aa15.99■□□□□ 0.15
HDAC3-213ENST00000492506 ZBED9Q6R2W3 1325 aa15.98■□□□□ 0.15
HDAC3-213ENST00000492506 GUCY1A2P33402 732 aa15.98■□□□□ 0.15
HDAC3-213ENST00000492506 USP14P54578 494 aa15.98■□□□□ 0.15
HDAC3-213ENST00000492506 POLA2Q14181 598 aa15.98■□□□□ 0.15
HDAC3-213ENST00000492506 SNX17Q15036 470 aa15.98■□□□□ 0.15
HDAC3-213ENST00000492506 CCDC158Q5M9N0 1113 aa15.98■□□□□ 0.15
HDAC3-213ENST00000492506 NAV1Q8NEY1 1877 aa15.98■□□□□ 0.15
HDAC3-213ENST00000492506 TTYH1Q9H313 450 aaPredicted RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms