RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 TCP10Q12799 353 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 TROAPQ12815 778 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 RBM26Q5T8P6 1007 aaKnown RBP11.28□□□□□ -0.6
USP54-214ENST00000492357 ZNF654Q8IZM8 581 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 DCPSQ96C86 337 aaKnown RBP11.28□□□□□ -0.6
USP54-214ENST00000492357 DEFB129Q9H1M3 183 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 SH2D4AQ9H788 454 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 DNAJC18Q9H819 358 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 KAT14Q9H8E8 782 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.28□□□□□ -0.6
USP54-214ENST00000492357 MTMR4Q9NYA4 1195 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 SMC3Q9UQE7 1217 aa11.28□□□□□ -0.6
USP54-214ENST00000492357 SPDYE4A6NLX3 237 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 CPLX1O14810 134 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 IFNAR1P17181 557 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 EPHX2P34913 555 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 ABCB5Q2M3G0 1257 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 ANGEL2Q5VTE6 544 aaKnown RBP11.27□□□□□ -0.61
USP54-214ENST00000492357 ZFPM1Q8IX07 1006 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 FANCBQ8NB91 859 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 CTCFLQ8NI51 663 aaPredicted RBP11.27□□□□□ -0.61
USP54-214ENST00000492357 TRPM4Q8TD43 1214 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 WASF1Q92558 559 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 TCEANC2Q96MN5 208 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 ZNF341Q9BYN7 854 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 IL17RBQ9NRM6 502 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 GGA3Q9NZ52 723 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 BRPF3Q9ULD4 1205 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 HPS5Q9UPZ3 1129 aa11.27□□□□□ -0.61
USP54-214ENST00000492357 GOLGA8AA7E2F4 631 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 CTNND1O60716 968 aaKnown RBP11.26□□□□□ -0.61
USP54-214ENST00000492357 EGFRP00533 1210 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 HIRAP54198 1017 aaPredicted RBP11.26□□□□□ -0.61
USP54-214ENST00000492357 SCRN1Q12765 414 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 COL9A3Q14050 684 aaPredicted RBP11.26□□□□□ -0.61
USP54-214ENST00000492357 RTN1Q16799 776 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 GPATCH4Q5T3I0 446 aaKnown RBP11.26□□□□□ -0.61
USP54-214ENST00000492357 CHST3Q7LGC8 479 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 TEX2Q8IWB9 1127 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 SULF1Q8IWU6 871 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 SLC44A5Q8NCS7 719 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 PNMA1Q8ND90 353 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 RNF26Q9BY78 433 aaPredicted RBP11.26□□□□□ -0.61
USP54-214ENST00000492357 LRRC2Q9BYS8 371 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 TMEM39BQ9GZU3 492 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 TAF1DQ9H5J8 278 aaPredicted RBP11.26□□□□□ -0.61
USP54-214ENST00000492357 INCENPQ9NQS7 918 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 ZNF112Q9UJU3 913 aa11.26□□□□□ -0.61
USP54-214ENST00000492357 SHTN1A0MZ66 631 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 LARGE1O95461 756 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 SNHG28P0DPA3 235 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 AKR1B1P15121 316 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 VEGFAP15692 232 aaPredicted RBP11.25□□□□□ -0.61
USP54-214ENST00000492357 NF2P35240 595 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 CAP2P40123 477 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 ASPRV1Q53RT3 343 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 FAM47AQ5JRC9 791 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 NOL9Q5SY16 702 aaKnown RBP11.25□□□□□ -0.61
USP54-214ENST00000492357 CCDC83Q8IWF9 413 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 TRIM22Q8IYM9 498 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 NSUN7Q8NE18 718 aaKnown RBP11.25□□□□□ -0.61
USP54-214ENST00000492357 GMCL1P1Q8NEA9 526 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 CEP95Q96GE4 821 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 TMEM47Q9BQJ4 181 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.25□□□□□ -0.61
USP54-214ENST00000492357 ARHGEF10LQ9HCE6 1279 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 STX8Q9UNK0 236 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 DOCK1Q14185 1865 aa11.25□□□□□ -0.61
USP54-214ENST00000492357 hCG_1984214I3L0E3 225 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 SMIM22K7EJ46 135 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 EVX2Q03828 476 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 ICA1Q05084 483 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 GRM4Q14833 912 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 NTRK3Q16288 839 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 CDC37L1Q7L3B6 337 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 USP48Q86UV5 1035 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 MICU3Q86XE3 530 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 ZNF713Q8N859 430 aaPredicted RBP11.24□□□□□ -0.61
USP54-214ENST00000492357 DCAF4Q8WV16 495 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 GMCL1Q96IK5 515 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 ZKSCAN3Q9BRR0 538 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 ZBTB21Q9ULJ3 1066 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 MYH4Q9Y623 1939 aa11.24□□□□□ -0.61
USP54-214ENST00000492357 WDR33Q9C0J8 1336 aaKnown RBP11.24□□□□□ -0.61
USP54-214ENST00000492357 ATAD5Q96QE3 1844 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 PHF20L1A8MW92 1017 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 PPP1R12BO60237 982 aaPredicted RBP11.23□□□□□ -0.61
USP54-214ENST00000492357 DEXIO95424 95 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 GJB2P29033 226 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 FKBP1BP68106 108 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 ST3GAL1Q11201 340 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 TRAF1Q13077 416 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 MAP3K11Q16584 847 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 TMTC3Q6ZXV5 915 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 NOL8Q76FK4 1167 aaKnown RBP11.23□□□□□ -0.61
USP54-214ENST00000492357 FAM184AQ8NB25 1140 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 NKX2-3Q8TAU0 364 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 SPZ1Q9BXG8 430 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 AS3MTQ9HBK9 375 aa11.23□□□□□ -0.61
USP54-214ENST00000492357 GPHNQ9NQX3 736 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms