RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 FAM196AQ6ZSG2 479 aa14.27□□□□□ -0.12
HMGN1-220ENST00000492280 ANAPC4Q9UJX5 808 aa14.27□□□□□ -0.12
HMGN1-220ENST00000492280 CNTNAP5Q8WYK1 1306 aa14.27□□□□□ -0.13
HMGN1-220ENST00000492280 USP17L3A6NCW0 530 aa14.27□□□□□ -0.13
HMGN1-220ENST00000492280 USP17L4A6NCW7 530 aa14.27□□□□□ -0.13
HMGN1-220ENST00000492280 VPS72Q15906 364 aa14.27□□□□□ -0.13
HMGN1-220ENST00000492280 CEP135Q66GS9 1140 aa14.27□□□□□ -0.13
HMGN1-220ENST00000492280 TPTE2Q6XPS3 522 aa14.27□□□□□ -0.13
HMGN1-220ENST00000492280 USP17L1Q7RTZ2 530 aa14.27□□□□□ -0.13
HMGN1-220ENST00000492280 SH3RF3Q8TEJ3 882 aaPredicted RBP14.27□□□□□ -0.13
HMGN1-220ENST00000492280 BRIP1Q9BX63 1249 aa14.27□□□□□ -0.13
HMGN1-220ENST00000492280 RNF26Q9BY78 433 aaPredicted RBP14.27□□□□□ -0.13
HMGN1-220ENST00000492280 INTS13Q9NVM9 706 aa14.27□□□□□ -0.13
HMGN1-220ENST00000492280 VWA3AA6NCI4 1184 aa14.26□□□□□ -0.13
HMGN1-220ENST00000492280 NPY5RQ15761 445 aa14.26□□□□□ -0.13
HMGN1-220ENST00000492280 E4F1Q66K89 784 aaPredicted RBP14.26□□□□□ -0.13
HMGN1-220ENST00000492280 PIK3AP1Q6ZUJ8 805 aa14.26□□□□□ -0.13
HMGN1-220ENST00000492280 STAG2Q8N3U4 1231 aa14.26□□□□□ -0.13
HMGN1-220ENST00000492280 MED15Q96RN5 788 aa14.26□□□□□ -0.13
HMGN1-220ENST00000492280 NID2Q14112 1375 aa14.26□□□□□ -0.13
HMGN1-220ENST00000492280 SFPQP23246 707 aaKnown RBP eCLIP14.26□□□□□ -0.13
HMGN1-220ENST00000492280 KRT2P35908 639 aa14.26□□□□□ -0.13
HMGN1-220ENST00000492280 MDM2Q00987 491 aaPredicted RBP14.26□□□□□ -0.13
HMGN1-220ENST00000492280 TMTC3Q6ZXV5 915 aa14.26□□□□□ -0.13
HMGN1-220ENST00000492280 CCAR2Q8N163 923 aaKnown RBP14.26□□□□□ -0.13
HMGN1-220ENST00000492280 TMTC2Q8N394 836 aa14.26□□□□□ -0.13
HMGN1-220ENST00000492280 SYMPKQ92797 1274 aaKnown RBP14.26□□□□□ -0.13
HMGN1-220ENST00000492280 TIGD1Q96MW7 591 aa14.26□□□□□ -0.13
HMGN1-220ENST00000492280 PHF20Q9BVI0 1012 aa14.26□□□□□ -0.13
HMGN1-220ENST00000492280 CRNKL1Q9BZJ0 848 aaKnown RBP14.26□□□□□ -0.13
HMGN1-220ENST00000492280 TMX1Q9H3N1 280 aa14.26□□□□□ -0.13
HMGN1-220ENST00000492280 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.26□□□□□ -0.13
HMGN1-220ENST00000492280 RFC4P35249 363 aa14.25□□□□□ -0.13
HMGN1-220ENST00000492280 GTF2F1P35269 517 aaKnown RBP eCLIP14.25□□□□□ -0.13
HMGN1-220ENST00000492280 OLFM4Q6UX06 510 aa14.25□□□□□ -0.13
HMGN1-220ENST00000492280 MAPKAPK5Q8IW41 473 aa14.25□□□□□ -0.13
HMGN1-220ENST00000492280 BPIFA3Q9BQP9 254 aa14.25□□□□□ -0.13
HMGN1-220ENST00000492280 SAMSN1Q9NSI8 373 aaKnown RBP14.25□□□□□ -0.13
HMGN1-220ENST00000492280 TRIM75PA6NK02 468 aa14.25□□□□□ -0.13
HMGN1-220ENST00000492280 ACTN4O43707 911 aaKnown RBP14.25□□□□□ -0.13
HMGN1-220ENST00000492280 GOLGA8HP0CJ92 632 aa14.25□□□□□ -0.13
HMGN1-220ENST00000492280 PTPN14Q15678 1187 aa14.25□□□□□ -0.13
HMGN1-220ENST00000492280 SLC10A5Q5PT55 438 aa14.25□□□□□ -0.13
HMGN1-220ENST00000492280 TGFBRAP1Q8WUH2 860 aa14.25□□□□□ -0.13
HMGN1-220ENST00000492280 BLZF1Q9H2G9 400 aa14.25□□□□□ -0.13
HMGN1-220ENST00000492280 LRRC4BQ9NT99 713 aa14.25□□□□□ -0.13
HMGN1-220ENST00000492280 NFE2L3Q9Y4A8 694 aa14.25□□□□□ -0.13
HMGN1-220ENST00000492280 SMTNL1A8MU46 457 aa14.24□□□□□ -0.13
HMGN1-220ENST00000492280 MCM7P33993 719 aa14.24□□□□□ -0.13
HMGN1-220ENST00000492280 USP5P45974 858 aa14.24□□□□□ -0.13
HMGN1-220ENST00000492280 TPM4P67936 248 aa14.24□□□□□ -0.13
HMGN1-220ENST00000492280 TFAP4Q01664 338 aa14.24□□□□□ -0.13
HMGN1-220ENST00000492280 RCSD1Q6JBY9 416 aa14.24□□□□□ -0.13
HMGN1-220ENST00000492280 CTCFLQ8NI51 663 aaPredicted RBP14.24□□□□□ -0.13
HMGN1-220ENST00000492280 NYXQ9GZU5 481 aa14.24□□□□□ -0.13
HMGN1-220ENST00000492280 OSBPL5Q9H0X9 879 aaPredicted RBP14.24□□□□□ -0.13
HMGN1-220ENST00000492280 PRDM10Q9NQV6 1147 aa14.24□□□□□ -0.13
HMGN1-220ENST00000492280 FAM205AQ6ZU69 1335 aa14.24□□□□□ -0.13
HMGN1-220ENST00000492280 SPDYE4A6NLX3 237 aa14.24□□□□□ -0.13
HMGN1-220ENST00000492280 NCBP1Q09161 790 aaKnown RBP14.24□□□□□ -0.13
HMGN1-220ENST00000492280 FAM177A1Q8N128 213 aaPredicted RBP14.24□□□□□ -0.13
HMGN1-220ENST00000492280 LRRN4CLQ8ND94 238 aa14.24□□□□□ -0.13
HMGN1-220ENST00000492280 SRPRBQ9Y5M8 271 aaKnown RBP14.24□□□□□ -0.13
HMGN1-220ENST00000492280 CCDC88AQ3V6T2 1871 aa14.23□□□□□ -0.13
HMGN1-220ENST00000492280 FAM237AA0A1B0GTK4 181 aa14.23□□□□□ -0.13
HMGN1-220ENST00000492280 PTGDRQ13258 359 aa14.23□□□□□ -0.13
HMGN1-220ENST00000492280 TYW1BQ6NUM6 668 aa14.23□□□□□ -0.13
HMGN1-220ENST00000492280 CCDC112Q8NEF3 446 aa14.23□□□□□ -0.13
HMGN1-220ENST00000492280 SMARCE1Q969G3 411 aa14.23□□□□□ -0.13
HMGN1-220ENST00000492280 IL17RBQ9NRM6 502 aa14.23□□□□□ -0.13
HMGN1-220ENST00000492280 SBF2Q86WG5 1849 aa14.23□□□□□ -0.13
HMGN1-220ENST00000492280 PLCD1P51178 756 aa14.23□□□□□ -0.13
HMGN1-220ENST00000492280 NLRP5P59047 1200 aa14.23□□□□□ -0.13
HMGN1-220ENST00000492280 CNBD1Q8NA66 436 aa14.23□□□□□ -0.13
HMGN1-220ENST00000492280 STX8Q9UNK0 236 aa14.23□□□□□ -0.13
HMGN1-220ENST00000492280 KIAA1551Q9HCM1 1747 aa14.22□□□□□ -0.13
HMGN1-220ENST00000492280 IKBKBO14920 756 aa14.22□□□□□ -0.13
HMGN1-220ENST00000492280 PRPF3O43395 683 aaKnown RBP14.22□□□□□ -0.13
HMGN1-220ENST00000492280 CD44P16070 742 aaKnown RBP14.22□□□□□ -0.13
HMGN1-220ENST00000492280 TTC38Q5R3I4 469 aa14.22□□□□□ -0.13
HMGN1-220ENST00000492280 NYAP1Q6ZVC0 841 aa14.22□□□□□ -0.13
HMGN1-220ENST00000492280 PPP1R13BQ96KQ4 1090 aa14.22□□□□□ -0.13
HMGN1-220ENST00000492280 PLIN2Q99541 437 aa14.22□□□□□ -0.13
HMGN1-220ENST00000492280 LAMB1P07942 1786 aa14.22□□□□□ -0.13
HMGN1-220ENST00000492280 LDHBP07195 334 aaKnown RBP14.22□□□□□ -0.13
HMGN1-220ENST00000492280 ADKP55263 362 aaKnown RBP14.22□□□□□ -0.13
HMGN1-220ENST00000492280 SLC35G1Q2M3R5 365 aa14.22□□□□□ -0.13
HMGN1-220ENST00000492280 PPP4R3BQ5MIZ7 849 aa14.22□□□□□ -0.13
HMGN1-220ENST00000492280 MEX3CQ5U5Q3 659 aaKnown RBP14.22□□□□□ -0.13
HMGN1-220ENST00000492280 SYT10Q6XYQ8 523 aa14.22□□□□□ -0.13
HMGN1-220ENST00000492280 ZNF215Q9UL58 517 aaPredicted RBP14.22□□□□□ -0.13
HMGN1-220ENST00000492280 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.21□□□□□ -0.13
HMGN1-220ENST00000492280 XBP1P17861 261 aa14.21□□□□□ -0.13
HMGN1-220ENST00000492280 CDK11BP21127 795 aaKnown RBP14.21□□□□□ -0.13
HMGN1-220ENST00000492280 GSDMDP57764 484 aa14.21□□□□□ -0.13
HMGN1-220ENST00000492280 MAPK8IP1Q9UQF2 711 aa14.21□□□□□ -0.13
HMGN1-220ENST00000492280 PP2D1A8MPX8 630 aa14.21□□□□□ -0.13
HMGN1-220ENST00000492280 DPYDQ12882 1025 aa14.21□□□□□ -0.13
HMGN1-220ENST00000492280 CREBRFQ8IUR6 639 aa14.21□□□□□ -0.13
HMGN1-220ENST00000492280 FNBP4Q8N3X1 1017 aaPredicted RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms