RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 SRBD1Q8N5C6 995 aaKnown RBP16.2■□□□□ 0.18
SMPD4-219ENST00000491128 CDK5RAP2Q96SN8 1893 aa16.2■□□□□ 0.18
SMPD4-219ENST00000491128 ASTN2O75129 1339 aaPredicted RBP16.19■□□□□ 0.18
SMPD4-219ENST00000491128 RAD21O60216 631 aa16.19■□□□□ 0.18
SMPD4-219ENST00000491128 GDF11O95390 407 aa16.19■□□□□ 0.18
SMPD4-219ENST00000491128 HDLBPQ00341 1268 aaKnown RBP16.19■□□□□ 0.18
SMPD4-219ENST00000491128 CAVIN1Q6NZI2 390 aaKnown RBP16.19■□□□□ 0.18
SMPD4-219ENST00000491128 FBXO18Q8NFZ0 1043 aa16.19■□□□□ 0.18
SMPD4-219ENST00000491128 CDKL5O76039 1030 aa16.19■□□□□ 0.18
SMPD4-219ENST00000491128 HLA-DOAP06340 250 aa16.19■□□□□ 0.18
SMPD4-219ENST00000491128 IFNAR1P17181 557 aa16.19■□□□□ 0.18
SMPD4-219ENST00000491128 MRIQ9BWK5 157 aa16.19■□□□□ 0.18
SMPD4-219ENST00000491128 DDX60LQ5H9U9 1706 aaKnown RBP16.18■□□□□ 0.18
SMPD4-219ENST00000491128 FMNL1O95466 1100 aaPredicted RBP16.18■□□□□ 0.18
SMPD4-219ENST00000491128 KRT40Q6A162 431 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 SHISA4Q96DD7 197 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 IDI2Q9BXS1 227 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 TMEM39BQ9GZU3 492 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 ZNF70Q9UC06 446 aaPredicted RBP16.18■□□□□ 0.18
SMPD4-219ENST00000491128 HDAC9Q9UKV0 1011 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 TBC1D10BQ4KMP7 808 aaPredicted RBP16.18■□□□□ 0.18
SMPD4-219ENST00000491128 USP17L2Q6R6M4 530 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 MIGA2Q7L4E1 593 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 NEDD1Q8NHV4 660 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 CTCFLQ8NI51 663 aaPredicted RBP16.18■□□□□ 0.18
SMPD4-219ENST00000491128 CSRNP1Q96S65 589 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 MTA3Q9BTC8 594 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 ZNF287Q9HBT7 754 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.18■□□□□ 0.18
SMPD4-219ENST00000491128 KIF3AQ9Y496 699 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 ATP6V1DQ9Y5K8 247 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 ZNF541Q9H0D2 1346 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 LAMB1P07942 1786 aa16.18■□□□□ 0.18
SMPD4-219ENST00000491128 WNT10BO00744 389 aa16.17■□□□□ 0.18
SMPD4-219ENST00000491128 GMPSP49915 693 aaPredicted RBP16.17■□□□□ 0.18
SMPD4-219ENST00000491128 JAG1P78504 1218 aa16.17■□□□□ 0.18
SMPD4-219ENST00000491128 DGKHQ86XP1 1220 aa16.17■□□□□ 0.18
SMPD4-219ENST00000491128 VPS54Q9P1Q0 977 aa16.17■□□□□ 0.18
SMPD4-219ENST00000491128 CLIP2Q9UDT6 1046 aa16.17■□□□□ 0.18
SMPD4-219ENST00000491128 FUT2Q10981 343 aa16.17■□□□□ 0.18
SMPD4-219ENST00000491128 RRP1BQ14684 758 aaKnown RBP16.17■□□□□ 0.18
SMPD4-219ENST00000491128 SYT17Q9BSW7 474 aa16.17■□□□□ 0.18
SMPD4-219ENST00000491128 MYOZ2Q9NPC6 264 aa16.17■□□□□ 0.18
SMPD4-219ENST00000491128 MYH1P12882 1939 aa16.16■□□□□ 0.18
SMPD4-219ENST00000491128 TCHHQ07283 1943 aa16.16■□□□□ 0.18
SMPD4-219ENST00000491128 ZNF646O15015 1829 aaPredicted RBP16.16■□□□□ 0.18
SMPD4-219ENST00000491128 GSE1Q14687 1217 aa16.16■□□□□ 0.18
SMPD4-219ENST00000491128 SLC35G1Q2M3R5 365 aa16.16■□□□□ 0.18
SMPD4-219ENST00000491128 FRMPD2Q68DX3 1309 aaPredicted RBP16.16■□□□□ 0.18
SMPD4-219ENST00000491128 TRIM22Q8IYM9 498 aa16.16■□□□□ 0.18
SMPD4-219ENST00000491128 MYO3BQ8WXR4 1341 aa16.16■□□□□ 0.18
SMPD4-219ENST00000491128 CCDC196A0A1B0GTZ2 297 aa16.16■□□□□ 0.18
SMPD4-219ENST00000491128 TMTC3Q6ZXV5 915 aa16.16■□□□□ 0.18
SMPD4-219ENST00000491128 MICALL2Q8IY33 904 aa16.16■□□□□ 0.18
SMPD4-219ENST00000491128 TRIM34Q9BYJ4 488 aa16.16■□□□□ 0.18
SMPD4-219ENST00000491128 VAT1LQ9HCJ6 419 aa16.16■□□□□ 0.18
SMPD4-219ENST00000491128 PI4KBQ9UBF8 816 aa16.16■□□□□ 0.18
SMPD4-219ENST00000491128 USP17L5A8MUK1 530 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 DDAH1O94760 285 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 KRT85P78386 507 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 PKN1Q16512 942 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 AGBL3Q8NEM8 1001 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 OXER1Q8TDS5 423 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 USP28Q96RU2 1077 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 MTMR4Q9NYA4 1195 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 MAD2L2Q9UI95 211 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 BTBD18B2RXH4 712 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 ADAMTS3O15072 1205 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 KIF23Q02241 960 aaPredicted RBP16.15■□□□□ 0.18
SMPD4-219ENST00000491128 UBA5Q9GZZ9 404 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 VPS33BQ9H267 617 aa16.15■□□□□ 0.18
SMPD4-219ENST00000491128 ISY1Q9ULR0 285 aaKnown RBP16.15■□□□□ 0.18
SMPD4-219ENST00000491128 AKAP17AQ02040 695 aaKnown RBP16.14■□□□□ 0.17
SMPD4-219ENST00000491128 NR5A1Q13285 461 aa16.14■□□□□ 0.17
SMPD4-219ENST00000491128 GNL2Q13823 731 aaKnown RBP16.14■□□□□ 0.17
SMPD4-219ENST00000491128 CERKLQ49MI3 558 aaPredicted RBP16.14■□□□□ 0.17
SMPD4-219ENST00000491128 SPATA32Q96LK8 384 aa16.14■□□□□ 0.17
SMPD4-219ENST00000491128 TCP11L1Q9NUJ3 509 aa16.14■□□□□ 0.17
SMPD4-219ENST00000491128 TMOD2Q9NZR1 351 aa16.14■□□□□ 0.17
SMPD4-219ENST00000491128 BRCA1P38398 1863 aaKnown RBP16.14■□□□□ 0.17
SMPD4-219ENST00000491128 YBX3P16989 372 aaKnown RBP eCLIP16.14■□□□□ 0.176e-7■□□□□ 9.3
SMPD4-219ENST00000491128 TNIP1Q15025 636 aa16.14■□□□□ 0.17
SMPD4-219ENST00000491128 KLHL40Q2TBA0 621 aa16.14■□□□□ 0.17
SMPD4-219ENST00000491128 PRAMEF18Q5VWM3 479 aa16.14■□□□□ 0.17
SMPD4-219ENST00000491128 GPKOWQ92917 476 aaPredicted RBP eCLIP16.14■□□□□ 0.17
SMPD4-219ENST00000491128 CNOT7Q9UIV1 285 aaKnown RBP16.14■□□□□ 0.17
SMPD4-219ENST00000491128 CYTH3O43739 400 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 TRIM29Q14134 588 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 SEPT2Q15019 361 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 SPDYE2Q495Y8 402 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 LEO1Q8WVC0 666 aaPredicted RBP16.13■□□□□ 0.17
SMPD4-219ENST00000491128 DHX36Q9H2U1 1008 aaKnown RBP16.13■□□□□ 0.17
SMPD4-219ENST00000491128 ZSCAN16Q9H4T2 348 aaPredicted RBP16.13■□□□□ 0.17
SMPD4-219ENST00000491128 TMEM63CQ9P1W3 806 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 CLIC4Q9Y696 253 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 CNTNAP1P78357 1384 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 CNTNAP5Q8WYK1 1306 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 FZD9O00144 591 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 DEXIO95424 95 aa16.13■□□□□ 0.17
SMPD4-219ENST00000491128 CALM1P0DP23 149 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms