RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 POLR3DP05423 398 aaPredicted RBP11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 CCL5P13501 91 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 CAPN2P17655 700 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 GJA8P48165 433 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 HERVK_113P62684 666 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 ABCB5Q2M3G0 1257 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 SLC4A8Q2Y0W8 1093 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 LBX2Q6XYB7 198 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 SIAH1Q8IUQ4 282 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 ACER1Q8TDN7 264 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 SDR42E1Q8WUS8 393 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 ARMT1Q9H993 441 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 TXNRD2Q9NNW7 524 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 MCM9Q9NXL9 1143 aa11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 ZBTB47Q9UFB7 747 aaPredicted RBP11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 FARP1Q9Y4F1 1045 aaPredicted RBP11.75□□□□□ -0.53
TMEM39A-210ENST00000490099 MBD4O95243 580 aa11.74□□□□□ -0.53
TMEM39A-210ENST00000490099 CYP2D6P10635 497 aa11.74□□□□□ -0.53
TMEM39A-210ENST00000490099 IRX3P78415 501 aaPredicted RBP11.74□□□□□ -0.53
TMEM39A-210ENST00000490099 C12orf60Q5U649 245 aa11.74□□□□□ -0.53
TMEM39A-210ENST00000490099 CATSPERGQ6ZRH7 1159 aa11.74□□□□□ -0.53
TMEM39A-210ENST00000490099 GPRC5AQ8NFJ5 357 aa11.74□□□□□ -0.53
TMEM39A-210ENST00000490099 NKX2-3Q8TAU0 364 aa11.74□□□□□ -0.53
TMEM39A-210ENST00000490099 GTF3C2Q8WUA4 911 aaPredicted RBP11.74□□□□□ -0.53
TMEM39A-210ENST00000490099 USP6NLQ92738 828 aa11.74□□□□□ -0.53
TMEM39A-210ENST00000490099 COA7Q96BR5 231 aa11.74□□□□□ -0.53
TMEM39A-210ENST00000490099 PAK6Q9NQU5 681 aaPredicted RBP11.74□□□□□ -0.53
TMEM39A-210ENST00000490099 SWAP70Q9UH65 585 aa11.74□□□□□ -0.53
TMEM39A-210ENST00000490099 A0A1W2PRG0 241 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 USP17L15C9J2P7 530 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 USP17L13C9JLJ4 530 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 USP17L11C9JVI0 530 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 USP17L18D6R9N7 530 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 USP17L22D6RA61 530 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 USP17L17D6RBQ6 530 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 USP17L19D6RCP7 530 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 USP17L20D6RJB6 530 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 SMIM22K7EJ46 135 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 XRCC5P13010 732 aaKnown RBP11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 ELNP15502 786 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 USP14P54578 494 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 UBXN2AP68543 259 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 USP17L24Q0WX57 530 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 SEPT2Q15019 361 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 Q3C1V9 767 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 ZSCAN25Q6NSZ9 544 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 KBTBD3Q8NAB2 608 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 STRBPQ96SI9 672 aaKnown RBP11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 CRISPLD2Q9H0B8 497 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 PUS7LQ9H0K6 701 aaKnown RBP11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 UNC93B1Q9H1C4 597 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 CABP5Q9NP86 173 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 BRCA2P51587 3418 aa11.73□□□□□ -0.53
TMEM39A-210ENST00000490099 USP17L12C9JPN9 530 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 USP17L21D6R901 530 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 PEX10O60683 326 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 CNMDO75829 334 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 SGPL1O95470 568 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 MYCP01106 439 aaPredicted RBP11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 INHAP05111 366 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 VCAM1P19320 739 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 RRP1P56182 461 aaKnown RBP11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 RAB3GAP1Q15042 981 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 GIMAP6Q6P9H5 292 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 TMEM179Q6ZVK1 233 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 SLC44A5Q8NCS7 719 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 CCDC17Q96LX7 622 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 RNF208Q9H0X6 261 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 RABGAP1Q9Y3P9 1069 aa11.72□□□□□ -0.53
TMEM39A-210ENST00000490099 CEP290O15078 2479 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 TTC41PQ6P2S7 1318 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 SALL3Q9BXA9 1300 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 IGHA2P01877 340 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 MAPK4P31152 587 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 CDK8P49336 464 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 ERVK-9P63128 1117 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 ERVK-24P63145 666 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 SBK1Q52WX2 424 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 MORN1Q5T089 497 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 MAP3K21Q5TCX8 1036 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 CTR9Q6PD62 1173 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 C16orf86Q6ZW13 317 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 PI4K2BQ8TCG2 481 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 U2AF1L4Q8WU68 220 aaKnown RBP11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 OSBP2Q969R2 916 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 DYNLL2Q96FJ2 89 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 PORCNQ9H237 461 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 PCDH10Q9P2E7 1040 aa11.71□□□□□ -0.53
TMEM39A-210ENST00000490099 CYP2D7A0A087X1C5 515 aa11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 GSG1L2A8MUP6 293 aa11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 RNF113AO15541 343 aaKnown RBP11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 HMGCRP04035 888 aa11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 ZFYP08048 801 aaPredicted RBP11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 KIAA1755Q5JYT7 1200 aa11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 SOCS4Q8WXH5 440 aa11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 APPBP2Q92624 585 aa11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 GPATCH3Q96I76 525 aa11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 FEZ1Q99689 392 aa11.7□□□□□ -0.54
TMEM39A-210ENST00000490099 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms