RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ZKSCAN1P17029 563 aaPredicted RBP15.07■□□□□ 0
CPSF3-204ENST00000489403 SHMT1P34896 483 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 CCL14Q16627 93 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 ABCB5Q2M3G0 1257 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 MORN1Q5T089 497 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 PLEKHH3Q7Z736 793 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 TRMT44Q8IYL2 757 aaKnown RBP15.07■□□□□ 0
CPSF3-204ENST00000489403 C7orf61Q8IZ16 206 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 ACER1Q8TDN7 264 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 NBPF3Q9H094 633 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 KIAA1683Q9H0B3 1180 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 C11orf49Q9H6J7 331 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 STAP2Q9UGK3 403 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 FRMPD3Q5JV73 1810 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 ZBED9Q6R2W3 1325 aa15.07■□□□□ 0
CPSF3-204ENST00000489403 MAGEB6P1A0A0J9YX57 407 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 USP17L15C9J2P7 530 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 USP17L13C9JLJ4 530 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 USP17L11C9JVI0 530 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 USP17L18D6R9N7 530 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 USP17L22D6RA61 530 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 USP17L17D6RBQ6 530 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 USP17L19D6RCP7 530 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 USP17L20D6RJB6 530 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 VCAM1P19320 739 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 GUCY1A2P33402 732 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 RGS2P41220 211 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 USP14P54578 494 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 EVX2Q03828 476 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 GABPAQ06546 454 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 CACNB2Q08289 660 aaPredicted RBP15.06■□□□□ 0
CPSF3-204ENST00000489403 USP17L24Q0WX57 530 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 TTF1Q15361 905 aaPredicted RBP15.06■□□□□ 0
CPSF3-204ENST00000489403 HSP90AB4PQ58FF6 505 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 CATSPERGQ6ZRH7 1159 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 CCAR1Q8IX12 1150 aaKnown RBP15.06■□□□□ 0
CPSF3-204ENST00000489403 APBA2Q99767 749 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 RABGAP1Q9Y3P9 1069 aa15.06■□□□□ 0
CPSF3-204ENST00000489403 LAMA3Q16787 3333 aa15.05■□□□□ -0
CPSF3-204ENST00000489403 PDE6AP16499 860 aa15.05■□□□□ -0
CPSF3-204ENST00000489403 CCND3P30281 292 aaPredicted RBP15.05■□□□□ -0
CPSF3-204ENST00000489403 SLC9C2Q5TAH2 1124 aa15.05■□□□□ -0
CPSF3-204ENST00000489403 CABP5Q9NP86 173 aa15.05■□□□□ -0
CPSF3-204ENST00000489403 ZMYND8Q9ULU4 1186 aaPredicted RBP15.05■□□□□ -0
CPSF3-204ENST00000489403 PFASO15067 1338 aa15.05■□□□□ -0
CPSF3-204ENST00000489403 ZNF532Q9HCE3 1301 aa15.04■□□□□ -0
CPSF3-204ENST00000489403 TCRBV5S4A2TA0A5A2 114 aa15.04■□□□□ -0
CPSF3-204ENST00000489403 APBB1O00213 710 aa15.04■□□□□ -0
CPSF3-204ENST00000489403 SOX1O00570 391 aaPredicted RBP15.04■□□□□ -0
CPSF3-204ENST00000489403 POLR3DP05423 398 aaPredicted RBP15.04■□□□□ -0
CPSF3-204ENST00000489403 MAP2K5Q13163 448 aa15.04■□□□□ -0
CPSF3-204ENST00000489403 LBX2Q6XYB7 198 aa15.04■□□□□ -0
CPSF3-204ENST00000489403 CLASRPQ8N2M8 674 aaKnown RBP15.04■□□□□ -0
CPSF3-204ENST00000489403 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.04■□□□□ -0
CPSF3-204ENST00000489403 KIF1BPQ96EK5 621 aa15.04■□□□□ -0
CPSF3-204ENST00000489403 DNAJC2Q99543 621 aaKnown RBP15.04■□□□□ -0
CPSF3-204ENST00000489403 GDF15Q99988 308 aa15.04■□□□□ -0
CPSF3-204ENST00000489403 CRNKL1Q9BZJ0 848 aaKnown RBP15.04■□□□□ -0
CPSF3-204ENST00000489403 RPAP3Q9H6T3 665 aaPredicted RBP15.04■□□□□ -0
CPSF3-204ENST00000489403 CWC22Q9HCG8 908 aaKnown RBP15.04■□□□□ -0
CPSF3-204ENST00000489403 BTBD7Q9P203 1132 aa15.04■□□□□ -0
CPSF3-204ENST00000489403 SPDYE16A6NNV3 312 aaPredicted RBP15.03■□□□□ -0
CPSF3-204ENST00000489403 GOLIM4O00461 696 aa15.03■□□□□ -0
CPSF3-204ENST00000489403 SYN1P17600 705 aa15.03■□□□□ -0
CPSF3-204ENST00000489403 CCNA1P78396 465 aa15.03■□□□□ -0
CPSF3-204ENST00000489403 SEPT2Q15019 361 aa15.03■□□□□ -0
CPSF3-204ENST00000489403 LHX8Q68G74 356 aa15.03■□□□□ -0
CPSF3-204ENST00000489403 SIRT2Q8IXJ6 389 aa15.03■□□□□ -0
CPSF3-204ENST00000489403 LCORLQ8N3X6 602 aa15.03■□□□□ -0
CPSF3-204ENST00000489403 SDR42E1Q8WUS8 393 aa15.03■□□□□ -0
CPSF3-204ENST00000489403 EDC3Q96F86 508 aaKnown RBP15.03■□□□□ -0
CPSF3-204ENST00000489403 MCM9Q9NXL9 1143 aa15.03■□□□□ -0
CPSF3-204ENST00000489403 FLRT1Q9NZU1 646 aa15.03■□□□□ -0
CPSF3-204ENST00000489403 MYH8P13535 1937 aa15.03■□□□□ -0
CPSF3-204ENST00000489403 A0A0G2JMZ2 1700 aa15.03■□□□□ -0
CPSF3-204ENST00000489403 A0A1W2PRG0 241 aa15.02■□□□□ -0
CPSF3-204ENST00000489403 IFIT2P09913 472 aaKnown RBP15.02■□□□□ -0
CPSF3-204ENST00000489403 COL6A1P12109 1028 aa15.02■□□□□ -0
CPSF3-204ENST00000489403 PTPREP23469 700 aa15.02■□□□□ -0
CPSF3-204ENST00000489403 BMP8BP34820 402 aa15.02■□□□□ -0
CPSF3-204ENST00000489403 WDR78Q5VTH9 848 aa15.02■□□□□ -0
CPSF3-204ENST00000489403 DIEXFQ68CQ4 756 aaKnown RBP15.02■□□□□ -0
CPSF3-204ENST00000489403 RPAP2Q8IXW5 612 aaPredicted RBP15.02■□□□□ -0
CPSF3-204ENST00000489403 LRCH3Q96II8 777 aa15.02■□□□□ -0
CPSF3-204ENST00000489403 DCP1AQ9NPI6 582 aaPredicted RBP15.02■□□□□ -0
CPSF3-204ENST00000489403 RLFQ13129 1914 aa15.02□□□□□ -0.01
CPSF3-204ENST00000489403 SLC15A5A6NIM6 579 aa15.01□□□□□ -0.01
CPSF3-204ENST00000489403 MPHOSPH10O00566 681 aaKnown RBP15.01□□□□□ -0.01
CPSF3-204ENST00000489403 GLRX3O76003 335 aaKnown RBP15.01□□□□□ -0.01
CPSF3-204ENST00000489403 CYP2D6P10635 497 aa15.01□□□□□ -0.01
CPSF3-204ENST00000489403 MS4A1P11836 297 aa15.01□□□□□ -0.01
CPSF3-204ENST00000489403 GRB14Q14449 540 aa15.01□□□□□ -0.01
CPSF3-204ENST00000489403 SLC44A5Q8NCS7 719 aa15.01□□□□□ -0.01
CPSF3-204ENST00000489403 NPLOC4Q8TAT6 608 aa15.01□□□□□ -0.01
CPSF3-204ENST00000489403 COG6Q9Y2V7 657 aa15.01□□□□□ -0.01
CPSF3-204ENST00000489403 BAZ2AQ9UIF9 1905 aaKnown RBP15.01□□□□□ -0.01
CPSF3-204ENST00000489403 ZNF236Q9UL36 1845 aa15.01□□□□□ -0.01
CPSF3-204ENST00000489403 HMMRO75330 724 aa15□□□□□ -0.01
CPSF3-204ENST00000489403 MAGEA10P43363 369 aaPredicted RBP15□□□□□ -0.01
CPSF3-204ENST00000489403 SLFNL1Q499Z3 407 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms