RNA–Protein interactions for RNA: ENST00000487996.5

HLA-DMB-261, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,746 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-261ENST00000487996 SEC23AQ15436 765 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 CATIPQ7Z7H3 387 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 LDHDQ86WU2 507 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 ANKS1AQ92625 1134 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 SLKQ9H2G2 1235 aaPredicted RBP12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 KANSL2Q9H9L4 492 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 RRAGCQ9HB90 399 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 CLEC11AQ9Y240 323 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 KLF18A0A0U1RQI7 1052 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 FAM196BA6NMK8 535 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 TTLL1O95922 423 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 ASNSP08243 561 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 AKR1B1P15121 316 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 APOBRQ0VD83 1088 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 NBPF12Q5TAG4 269 aaPredicted RBP12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 MIGA2Q7L4E1 593 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 KAT14Q9H8E8 782 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 TPCN1Q9ULQ1 816 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 NAP1L2Q9ULW6 460 aaPredicted RBP12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 STX8Q9UNK0 236 aa12.37□□□□□ -0.43
HLA-DMB-261ENST00000487996 GREB1LQ9C091 1923 aaPredicted RBP12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 CCDC196A0A1B0GTZ2 297 aa12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 GOLGA8BA8MQT2 603 aa12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 ZBTB43O43298 467 aa12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 PPP1R12BO60237 982 aaPredicted RBP12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 DDAH1O94760 285 aa12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 TOP1P11387 765 aaKnown RBP12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 HSPA6P17066 643 aa12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 APOA5Q6Q788 366 aa12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 USP48Q86UV5 1035 aa12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 CEP95Q96GE4 821 aa12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 INTS4Q96HW7 963 aaKnown RBP12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 IL17RBQ9NRM6 502 aa12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 MTMR4Q9NYA4 1195 aa12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 SYNPO2Q9UMS6 1093 aa12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 SCAF8Q9UPN6 1271 aaKnown RBP12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.36□□□□□ -0.43
HLA-DMB-261ENST00000487996 IGKV6D-41A0A0C4DH26 115 aa12.35□□□□□ -0.43
HLA-DMB-261ENST00000487996 CTNND1O60716 968 aaKnown RBP12.35□□□□□ -0.43
HLA-DMB-261ENST00000487996 PFKFB2O60825 505 aa12.35□□□□□ -0.43
HLA-DMB-261ENST00000487996 PDIA3P30101 505 aaKnown RBP12.35□□□□□ -0.43
HLA-DMB-261ENST00000487996 CAP2P40123 477 aa12.35□□□□□ -0.43
HLA-DMB-261ENST00000487996 NOVP48745 357 aa12.35□□□□□ -0.43
HLA-DMB-261ENST00000487996 ME3Q16798 604 aa12.35□□□□□ -0.43
HLA-DMB-261ENST00000487996 CPLX2Q6PUV4 134 aaKnown RBP12.35□□□□□ -0.43
HLA-DMB-261ENST00000487996 CDAN1Q8IWY9 1227 aa12.35□□□□□ -0.43
HLA-DMB-261ENST00000487996 NKX2-3Q8TAU0 364 aa12.35□□□□□ -0.43
HLA-DMB-261ENST00000487996 ADM5C9JUS6 153 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 NMT2O60551 498 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 GDF11O95390 407 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 GH2P01242 217 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 METAP2P50579 478 aaKnown RBP eCLIP12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 ICA1Q05084 483 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 CUL4AQ13619 759 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 RCSD1Q6JBY9 416 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 ZNF654Q8IZM8 581 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 GTF3C6Q969F1 213 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 MAP3K14Q99558 947 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 SH2D4AQ9H788 454 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 GPHNQ9NQX3 736 aaPredicted RBP12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 NYAP2Q9P242 653 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 ZBTB21Q9ULJ3 1066 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 NID2Q14112 1375 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 GOLGA8AA7E2F4 631 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 PHF20L1A8MW92 1017 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 CPLX1O14810 134 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 CDKL5O76039 1030 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 KIF5BP33176 963 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 IREB2P48200 963 aaKnown RBP12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 RAB3GAP1Q15042 981 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 MICU3Q86XE3 530 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 PNMA1Q8ND90 353 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 CTCFLQ8NI51 663 aaPredicted RBP12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 CDCA5Q96FF9 252 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 WRNIP1Q96S55 665 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 LARP6Q9BRS8 491 aaKnown RBP12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 LLPHQ9BRT6 129 aaKnown RBP12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 ARHGEF10LQ9HCE6 1279 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 NMRK2Q9NPI5 230 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 RBM28Q9NW13 759 aaKnown RBP12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 ZNF112Q9UJU3 913 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 BRPF3Q9ULD4 1205 aa12.34□□□□□ -0.43
HLA-DMB-261ENST00000487996 STK3Q13188 491 aa12.33□□□□□ -0.44
HLA-DMB-261ENST00000487996 SEPT2Q15019 361 aa12.33□□□□□ -0.44
HLA-DMB-261ENST00000487996 PIP4P2Q8N4L2 257 aa12.33□□□□□ -0.44
HLA-DMB-261ENST00000487996 KLRG1Q96E93 195 aa12.33□□□□□ -0.44
HLA-DMB-261ENST00000487996 TMEM47Q9BQJ4 181 aa12.33□□□□□ -0.44
HLA-DMB-261ENST00000487996 CWC22Q9HCG8 908 aaKnown RBP12.33□□□□□ -0.44
HLA-DMB-261ENST00000487996 PICK1Q9NRD5 415 aa12.33□□□□□ -0.44
HLA-DMB-261ENST00000487996 KIF3AQ9Y496 699 aa12.33□□□□□ -0.44
HLA-DMB-261ENST00000487996 MYH4Q9Y623 1939 aa12.33□□□□□ -0.44
HLA-DMB-261ENST00000487996 ATAD5Q96QE3 1844 aa12.33□□□□□ -0.44
HLA-DMB-261ENST00000487996 LARGE1O95461 756 aa12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 GNAQP50148 359 aa12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 ATP2B2Q01814 1243 aa12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 RTN1Q16799 776 aa12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 PRAMEF18Q5VWM3 479 aa12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 ARMC9Q7Z3E5 817 aa12.32□□□□□ -0.44
HLA-DMB-261ENST00000487996 CCDC83Q8IWF9 413 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms