RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 K7ELQ4 463 aaPredicted RBP8.49□□□□□ -1.05
USP48-209ENST00000487880 UBOX5O94941 541 aa8.49□□□□□ -1.05
USP48-209ENST00000487880 RAG1P15918 1043 aa8.49□□□□□ -1.05
USP48-209ENST00000487880 CCNFP41002 786 aa8.49□□□□□ -1.05
USP48-209ENST00000487880 RUFY4Q6ZNE9 571 aa8.49□□□□□ -1.05
USP48-209ENST00000487880 CCDC74BQ96LY2 380 aa8.49□□□□□ -1.05
USP48-209ENST00000487880 SLC9A7Q96T83 725 aa8.49□□□□□ -1.05
USP48-209ENST00000487880 KIF2CQ99661 725 aa8.49□□□□□ -1.05
USP48-209ENST00000487880 METTL22Q9BUU2 404 aaPredicted RBP8.49□□□□□ -1.05
USP48-209ENST00000487880 TANGO6Q9C0B7 1094 aa8.49□□□□□ -1.05
USP48-209ENST00000487880 CEP131Q9UPN4 1083 aa8.49□□□□□ -1.05
USP48-209ENST00000487880 PRR19A6NJB7 356 aa8.48□□□□□ -1.05
USP48-209ENST00000487880 SSBP05455 408 aaKnown RBP eCLIP8.48□□□□□ -1.05
USP48-209ENST00000487880 GUCY2CP25092 1073 aa8.48□□□□□ -1.05
USP48-209ENST00000487880 POLR2BP30876 1174 aaKnown RBP8.48□□□□□ -1.05
USP48-209ENST00000487880 SF3A1Q15459 793 aaKnown RBP8.48□□□□□ -1.05
USP48-209ENST00000487880 CYP27C1Q4G0S4 372 aa8.48□□□□□ -1.05
USP48-209ENST00000487880 PHACTR4Q8IZ21 702 aa8.48□□□□□ -1.05
USP48-209ENST00000487880 BAHD1Q8TBE0 780 aaPredicted RBP8.48□□□□□ -1.05
USP48-209ENST00000487880 ANAPC16Q96DE5 110 aa8.48□□□□□ -1.05
USP48-209ENST00000487880 HEXIM2Q96MH2 286 aaKnown RBP8.48□□□□□ -1.05
USP48-209ENST00000487880 ZNF408Q9H9D4 720 aa8.48□□□□□ -1.05
USP48-209ENST00000487880 CASP7P55210 303 aa8.47□□□□□ -1.05
USP48-209ENST00000487880 XP32Q5T750 250 aa8.47□□□□□ -1.05
USP48-209ENST00000487880 DUSP27Q5VZP5 1158 aa8.47□□□□□ -1.05
USP48-209ENST00000487880 ARMC5Q96C12 935 aa8.47□□□□□ -1.05
USP48-209ENST00000487880 ATG3Q9NT62 314 aa8.47□□□□□ -1.05
USP48-209ENST00000487880 MAPK8IP1Q9UQF2 711 aa8.47□□□□□ -1.05
USP48-209ENST00000487880 CNTNAP4Q9C0A0 1308 aa8.47□□□□□ -1.05
USP48-209ENST00000487880 IGF2BP3O00425 579 aaKnown RBP eCLIP8.46□□□□□ -1.06
USP48-209ENST00000487880 ETFBP38117 255 aa8.46□□□□□ -1.06
USP48-209ENST00000487880 ETV3P41162 512 aa8.46□□□□□ -1.06
USP48-209ENST00000487880 ZNF746Q6NUN9 644 aaPredicted RBP8.46□□□□□ -1.06
USP48-209ENST00000487880 C22orf34Q6ZV56 151 aa8.46□□□□□ -1.06
USP48-209ENST00000487880 OSBPL1AQ9BXW6 950 aa8.46□□□□□ -1.06
USP48-209ENST00000487880 MRVI1Q9Y6F6 885 aa8.46□□□□□ -1.06
USP48-209ENST00000487880 ATP2B1P20020 1258 aa8.45□□□□□ -1.06
USP48-209ENST00000487880 ZYXQ15942 572 aaKnown RBP8.45□□□□□ -1.06
USP48-209ENST00000487880 TTC6Q86TZ1 520 aa8.45□□□□□ -1.06
USP48-209ENST00000487880 CDH24Q86UP0 819 aa8.45□□□□□ -1.06
USP48-209ENST00000487880 COX4I2Q96KJ9 171 aa8.45□□□□□ -1.06
USP48-209ENST00000487880 PRDM5Q9NQX1 630 aaPredicted RBP8.45□□□□□ -1.06
USP48-209ENST00000487880 PRKAG3Q9UGI9 489 aa8.45□□□□□ -1.06
USP48-209ENST00000487880 GTF2IRD1Q9UHL9 959 aa8.45□□□□□ -1.06
USP48-209ENST00000487880 U3KQE9 123 aa8.45□□□□□ -1.06
USP48-209ENST00000487880 A0A1W2PQH9 124 aa8.44□□□□□ -1.06
USP48-209ENST00000487880 TNNI3KQ59H18 835 aa8.44□□□□□ -1.06
USP48-209ENST00000487880 UNC5AQ6ZN44 842 aa8.44□□□□□ -1.06
USP48-209ENST00000487880 TMEM192Q8IY95 271 aa8.44□□□□□ -1.06
USP48-209ENST00000487880 VWCEQ96DN2 955 aa8.44□□□□□ -1.06
USP48-209ENST00000487880 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP48-209ENST00000487880 MKNK2Q9HBH9 465 aa8.44□□□□□ -1.06
USP48-209ENST00000487880 PIM2Q9P1W9 311 aa8.44□□□□□ -1.06
USP48-209ENST00000487880 SMAD7O15105 426 aaKnown RBP8.43□□□□□ -1.06
USP48-209ENST00000487880 ZNF865P0CJ78 1059 aaPredicted RBP8.43□□□□□ -1.06
USP48-209ENST00000487880 GBP1P32455 592 aa8.43□□□□□ -1.06
USP48-209ENST00000487880 RNF141Q8WVD5 230 aa8.43□□□□□ -1.06
USP48-209ENST00000487880 KREMEN1Q96MU8 473 aa8.43□□□□□ -1.06
USP48-209ENST00000487880 TNKS2Q9H2K2 1166 aa8.43□□□□□ -1.06
USP48-209ENST00000487880 TPX2Q9ULW0 747 aaKnown RBP8.43□□□□□ -1.06
USP48-209ENST00000487880 LEMD3Q9Y2U8 911 aa8.43□□□□□ -1.06
USP48-209ENST00000487880 TGFB1P01137 390 aa8.42□□□□□ -1.06
USP48-209ENST00000487880 FOSL1P15407 271 aa8.42□□□□□ -1.06
USP48-209ENST00000487880 CYP7A1P22680 504 aa8.42□□□□□ -1.06
USP48-209ENST00000487880 OXCT1P55809 520 aa8.42□□□□□ -1.06
USP48-209ENST00000487880 SLC6A18Q96N87 628 aa8.42□□□□□ -1.06
USP48-209ENST00000487880 ASPNQ9BXN1 380 aa8.42□□□□□ -1.06
USP48-209ENST00000487880 SLC12A7Q9Y666 1083 aa8.42□□□□□ -1.06
USP48-209ENST00000487880 LTBP3Q9NS15 1303 aa8.42□□□□□ -1.06
USP48-209ENST00000487880 RBAK-RBAKDNI3L0D1 243 aa8.41□□□□□ -1.06
USP48-209ENST00000487880 KLF4O43474 513 aa8.41□□□□□ -1.06
USP48-209ENST00000487880 CLEC3AO75596 197 aa8.41□□□□□ -1.06
USP48-209ENST00000487880 SFRP5Q5T4F7 317 aa8.41□□□□□ -1.06
USP48-209ENST00000487880 FAM181AQ8N9Y4 354 aa8.41□□□□□ -1.06
USP48-209ENST00000487880 DHRS1Q96LJ7 313 aa8.41□□□□□ -1.06
USP48-209ENST00000487880 DRC1Q96MC2 740 aa8.41□□□□□ -1.06
USP48-209ENST00000487880 FBXL18Q96ME1 805 aa8.41□□□□□ -1.06
USP48-209ENST00000487880 SUCOQ9UBS9 1254 aaKnown RBP8.41□□□□□ -1.06
USP48-209ENST00000487880 ZNF214Q9UL59 606 aaPredicted RBP8.41□□□□□ -1.06
USP48-209ENST00000487880 RNF112Q9ULX5 631 aa8.41□□□□□ -1.06
USP48-209ENST00000487880 PRR33A8MZF0 331 aa8.4□□□□□ -1.06
USP48-209ENST00000487880 CYP26A1O43174 497 aa8.4□□□□□ -1.06
USP48-209ENST00000487880 STK10O94804 968 aaKnown RBP8.4□□□□□ -1.06
USP48-209ENST00000487880 KIR3DL1P43629 444 aa8.4□□□□□ -1.06
USP48-209ENST00000487880 PMS1P54277 932 aaKnown RBP8.4□□□□□ -1.06
USP48-209ENST00000487880 RNF4P78317 190 aa8.4□□□□□ -1.06
USP48-209ENST00000487880 RBL2Q08999 1139 aa8.4□□□□□ -1.06
USP48-209ENST00000487880 NBPF12Q5TAG4 269 aaPredicted RBP8.4□□□□□ -1.06
USP48-209ENST00000487880 DHX38Q92620 1227 aaKnown RBP8.4□□□□□ -1.06
USP48-209ENST00000487880 LRRC4CQ9HCJ2 640 aa8.4□□□□□ -1.06
USP48-209ENST00000487880 CAPN6Q9Y6Q1 641 aa8.4□□□□□ -1.06
USP48-209ENST00000487880 FAM86C2PA6NEL3 165 aa8.39□□□□□ -1.07
USP48-209ENST00000487880 HOXA10P31260 410 aaPredicted RBP8.39□□□□□ -1.07
USP48-209ENST00000487880 MSMPQ1L6U9 139 aa8.39□□□□□ -1.07
USP48-209ENST00000487880 ANKS3Q6ZW76 656 aa8.39□□□□□ -1.07
USP48-209ENST00000487880 PPFIBP1Q86W92 1011 aa8.39□□□□□ -1.07
USP48-209ENST00000487880 MFSD4AQ8N468 514 aa8.39□□□□□ -1.07
USP48-209ENST00000487880 Q96M66 194 aa8.39□□□□□ -1.07
USP48-209ENST00000487880 PHAXQ9H814 394 aaKnown RBP8.39□□□□□ -1.07
USP48-209ENST00000487880 ACTR10Q9NZ32 417 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms