RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CCDC69A6NI79 296 aa16.56■□□□□ 0.24
CUX1-209ENST00000487284 FAM196BA6NMK8 535 aa16.56■□□□□ 0.24
CUX1-209ENST00000487284 VEGFAP15692 232 aaPredicted RBP16.56■□□□□ 0.24
CUX1-209ENST00000487284 CDK8P49336 464 aa16.56■□□□□ 0.24
CUX1-209ENST00000487284 METAP2P50579 478 aaKnown RBP eCLIP16.56■□□□□ 0.24
CUX1-209ENST00000487284 NFXL1Q6ZNB6 911 aa16.56■□□□□ 0.24
CUX1-209ENST00000487284 PNMA8AQ86V59 439 aaPredicted RBP16.56■□□□□ 0.24
CUX1-209ENST00000487284 CRACR2BQ8N4Y2 399 aaPredicted RBP16.56■□□□□ 0.24
CUX1-209ENST00000487284 ZKSCAN3Q9BRR0 538 aa16.56■□□□□ 0.24
CUX1-209ENST00000487284 NMRK2Q9NPI5 230 aa16.56■□□□□ 0.24
CUX1-209ENST00000487284 SLC12A7Q9Y666 1083 aa16.56■□□□□ 0.24
CUX1-209ENST00000487284 TNKSO95271 1327 aa16.56■□□□□ 0.24
CUX1-209ENST00000487284 POTEIP0CG38 1075 aa16.55■□□□□ 0.24
CUX1-209ENST00000487284 POTEJP0CG39 1038 aa16.55■□□□□ 0.24
CUX1-209ENST00000487284 FDPSP14324 419 aaKnown RBP16.55■□□□□ 0.24
CUX1-209ENST00000487284 RAB11FIP4Q86YS3 637 aa16.55■□□□□ 0.24
CUX1-209ENST00000487284 DCPSQ96C86 337 aaKnown RBP16.55■□□□□ 0.24
CUX1-209ENST00000487284 ZSCAN10Q96SZ4 725 aaPredicted RBP16.55■□□□□ 0.24
CUX1-209ENST00000487284 MKNK2Q9HBH9 465 aa16.55■□□□□ 0.24
CUX1-209ENST00000487284 CPLX1O14810 134 aa16.55■□□□□ 0.24
CUX1-209ENST00000487284 RANBP6O60518 1105 aaKnown RBP16.55■□□□□ 0.24
CUX1-209ENST00000487284 SHMT1P34896 483 aa16.55■□□□□ 0.24
CUX1-209ENST00000487284 METTL16Q86W50 562 aaKnown RBP16.55■□□□□ 0.24
CUX1-209ENST00000487284 MICU3Q86XE3 530 aa16.55■□□□□ 0.24
CUX1-209ENST00000487284 IQCA1Q86XH1 822 aa16.55■□□□□ 0.24
CUX1-209ENST00000487284 ENAHQ8N8S7 591 aaPredicted RBP16.55■□□□□ 0.24
CUX1-209ENST00000487284 TMEM87AQ8NBN3 555 aa16.55■□□□□ 0.24
CUX1-209ENST00000487284 ZC3H15Q8WU90 426 aaKnown RBP16.55■□□□□ 0.24
CUX1-209ENST00000487284 GOLGA8AA7E2F4 631 aa16.54■□□□□ 0.24
CUX1-209ENST00000487284 ADM5C9JUS6 153 aa16.54■□□□□ 0.24
CUX1-209ENST00000487284 CDKL5O76039 1030 aa16.54■□□□□ 0.24
CUX1-209ENST00000487284 RASA1P20936 1047 aa16.54■□□□□ 0.24
CUX1-209ENST00000487284 FAM47AQ5JRC9 791 aa16.54■□□□□ 0.24
CUX1-209ENST00000487284 NBPF12Q5TAG4 269 aaPredicted RBP16.54■□□□□ 0.24
CUX1-209ENST00000487284 PRAMEF18Q5VWM3 479 aa16.54■□□□□ 0.24
CUX1-209ENST00000487284 SYNE3Q6ZMZ3 975 aa16.54■□□□□ 0.24
CUX1-209ENST00000487284 FOXP4Q8IVH2 680 aaPredicted RBP16.54■□□□□ 0.24
CUX1-209ENST00000487284 RGS22Q8NE09 1264 aa16.54■□□□□ 0.24
CUX1-209ENST00000487284 FAM217BQ9NTX9 383 aaPredicted RBP16.54■□□□□ 0.24
CUX1-209ENST00000487284 SWAP70Q9UH65 585 aa16.54■□□□□ 0.24
CUX1-209ENST00000487284 GREB1LQ9C091 1923 aaPredicted RBP16.54■□□□□ 0.24
CUX1-209ENST00000487284 PRPF40AO75400 957 aaKnown RBP16.53■□□□□ 0.24
CUX1-209ENST00000487284 RXRAP19793 462 aa16.53■□□□□ 0.24
CUX1-209ENST00000487284 CDC27P30260 824 aa16.53■□□□□ 0.24
CUX1-209ENST00000487284 NTRK3Q16288 839 aa16.53■□□□□ 0.24
CUX1-209ENST00000487284 KLHL40Q2TBA0 621 aa16.53■□□□□ 0.24
CUX1-209ENST00000487284 CPLX2Q6PUV4 134 aaKnown RBP16.53■□□□□ 0.24
CUX1-209ENST00000487284 DLK2Q6UY11 383 aa16.53■□□□□ 0.24
CUX1-209ENST00000487284 SULF1Q8IWU6 871 aa16.53■□□□□ 0.24
CUX1-209ENST00000487284 ZNF654Q8IZM8 581 aa16.53■□□□□ 0.24
CUX1-209ENST00000487284 TRIM34Q9BYJ4 488 aa16.53■□□□□ 0.24
CUX1-209ENST00000487284 ZNF287Q9HBT7 754 aa16.53■□□□□ 0.24
CUX1-209ENST00000487284 ORC3Q9UBD5 711 aaPredicted RBP16.53■□□□□ 0.24
CUX1-209ENST00000487284 H3BQV1 296 aa16.52■□□□□ 0.24
CUX1-209ENST00000487284 ADD1P35611 737 aaKnown RBP16.52■□□□□ 0.24
CUX1-209ENST00000487284 RESTQ13127 1097 aa16.52■□□□□ 0.24
CUX1-209ENST00000487284 GSE1Q14687 1217 aa16.52■□□□□ 0.24
CUX1-209ENST00000487284 IFFO2Q5TF58 517 aa16.52■□□□□ 0.24
CUX1-209ENST00000487284 MIGA2Q7L4E1 593 aa16.52■□□□□ 0.24
CUX1-209ENST00000487284 KRT26Q7Z3Y9 468 aa16.52■□□□□ 0.24
CUX1-209ENST00000487284 MYL10Q9BUA6 226 aa16.52■□□□□ 0.24
CUX1-209ENST00000487284 HERC5Q9UII4 1024 aaKnown RBP16.52■□□□□ 0.24
CUX1-209ENST00000487284 CLEC11AQ9Y240 323 aa16.52■□□□□ 0.24
CUX1-209ENST00000487284 PPP2R3BQ9Y5P8 575 aa16.52■□□□□ 0.24
CUX1-209ENST00000487284 STK36Q9NRP7 1315 aa16.52■□□□□ 0.24
CUX1-209ENST00000487284 SSC5DA1L4H1 1573 aa16.51■□□□□ 0.23
CUX1-209ENST00000487284 TSPY2A6NKD2 308 aa16.51■□□□□ 0.23
CUX1-209ENST00000487284 TFAP4Q01664 338 aa16.51■□□□□ 0.23
CUX1-209ENST00000487284 PPP2R5BQ15173 497 aa16.51■□□□□ 0.23
CUX1-209ENST00000487284 FOXD4L6Q3SYB3 417 aaPredicted RBP16.51■□□□□ 0.23
CUX1-209ENST00000487284 FOXD4L3Q6VB84 417 aaPredicted RBP16.51■□□□□ 0.23
CUX1-209ENST00000487284 FERMT3Q86UX7 667 aa16.51■□□□□ 0.23
CUX1-209ENST00000487284 ZNF444Q8N0Y2 327 aaPredicted RBP16.51■□□□□ 0.23
CUX1-209ENST00000487284 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.51■□□□□ 0.23
CUX1-209ENST00000487284 CNPY2Q9Y2B0 182 aa16.51■□□□□ 0.23
CUX1-209ENST00000487284 AKR1B1P15121 316 aa16.51■□□□□ 0.23
CUX1-209ENST00000487284 MAP3K10Q02779 954 aa16.51■□□□□ 0.23
CUX1-209ENST00000487284 RTN1Q16799 776 aa16.51■□□□□ 0.23
CUX1-209ENST00000487284 IFIT1BQ5T764 474 aaKnown RBP16.51■□□□□ 0.23
CUX1-209ENST00000487284 TATDN1Q6P1N9 297 aa16.51■□□□□ 0.23
CUX1-209ENST00000487284 USP48Q86UV5 1035 aa16.51■□□□□ 0.23
CUX1-209ENST00000487284 GLIS2Q9BZE0 524 aaPredicted RBP16.51■□□□□ 0.23
CUX1-209ENST00000487284 ZSCAN16Q9H4T2 348 aaPredicted RBP16.51■□□□□ 0.23
CUX1-209ENST00000487284 DDX49Q9Y6V7 483 aaKnown RBP16.51■□□□□ 0.23
CUX1-209ENST00000487284 CCDC196A0A1B0GTZ2 297 aa16.5■□□□□ 0.23
CUX1-209ENST00000487284 TBC1D12O60347 775 aa16.5■□□□□ 0.23
CUX1-209ENST00000487284 TSPY3P0CV98 308 aa16.5■□□□□ 0.23
CUX1-209ENST00000487284 TSPY8P0CW00 308 aa16.5■□□□□ 0.23
CUX1-209ENST00000487284 IFNAR1P17181 557 aa16.5■□□□□ 0.23
CUX1-209ENST00000487284 DNM1Q05193 864 aaKnown RBP16.5■□□□□ 0.23
CUX1-209ENST00000487284 RRP1BQ14684 758 aaKnown RBP16.5■□□□□ 0.23
CUX1-209ENST00000487284 MAP1SQ66K74 1059 aaPredicted RBP16.5■□□□□ 0.23
CUX1-209ENST00000487284 CCDC144CPQ8IYA2 1237 aa16.5■□□□□ 0.23
CUX1-209ENST00000487284 TAOK2Q9UL54 1235 aa16.5■□□□□ 0.23
CUX1-209ENST00000487284 MYH4Q9Y623 1939 aa16.49■□□□□ 0.23
CUX1-209ENST00000487284 ATAD5Q96QE3 1844 aa16.49■□□□□ 0.23
CUX1-209ENST00000487284 NMT2O60551 498 aa16.49■□□□□ 0.23
CUX1-209ENST00000487284 PPFIA3O75145 1194 aa16.49■□□□□ 0.23
CUX1-209ENST00000487284 DDAH1O94760 285 aa16.49■□□□□ 0.23
CUX1-209ENST00000487284 CALM1P0DP23 149 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms