RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 GRAMD1CQ8IYS0 662 aa17.5■□□□□ 0.39
C9orf3-218ENST00000482056 DHX58Q96C10 678 aa17.5■□□□□ 0.39
C9orf3-218ENST00000482056 ACSBG1Q96GR2 724 aa17.5■□□□□ 0.39
C9orf3-218ENST00000482056 PYM1Q9BRP8 204 aaKnown RBP17.5■□□□□ 0.39
C9orf3-218ENST00000482056 MYH14Q7Z406 1995 aaKnown RBP17.5■□□□□ 0.39
C9orf3-218ENST00000482056 ITPK1Q13572 414 aa17.49■□□□□ 0.39
C9orf3-218ENST00000482056 SF3B3Q15393 1217 aaKnown RBP17.49■□□□□ 0.39
C9orf3-218ENST00000482056 ZNF827Q17R98 1081 aa17.49■□□□□ 0.39
C9orf3-218ENST00000482056 TRIM65Q6PJ69 517 aa17.49■□□□□ 0.39
C9orf3-218ENST00000482056 TMEM139Q8IV31 216 aa17.49■□□□□ 0.39
C9orf3-218ENST00000482056 TRMT44Q8IYL2 757 aaKnown RBP17.49■□□□□ 0.39
C9orf3-218ENST00000482056 UBXN4Q92575 508 aa17.49■□□□□ 0.39
C9orf3-218ENST00000482056 ARGLU1Q9NWB6 273 aaPredicted RBP17.49■□□□□ 0.39
C9orf3-218ENST00000482056 V9GY48 417 aaPredicted RBP17.49■□□□□ 0.39
C9orf3-218ENST00000482056 URI1O94763 535 aaPredicted RBP17.49■□□□□ 0.39
C9orf3-218ENST00000482056 FGRP09769 529 aa17.49■□□□□ 0.39
C9orf3-218ENST00000482056 ERCC6LQ2NKX8 1250 aa17.49■□□□□ 0.39
C9orf3-218ENST00000482056 HSP90AA4PQ58FG1 418 aa17.49■□□□□ 0.39
C9orf3-218ENST00000482056 SPATA1Q5VX52 437 aa17.49■□□□□ 0.39
C9orf3-218ENST00000482056 CTCFLQ8NI51 663 aaPredicted RBP17.49■□□□□ 0.39
C9orf3-218ENST00000482056 GSDMAQ96QA5 445 aa17.49■□□□□ 0.39
C9orf3-218ENST00000482056 CTAGE1Q96RT6 745 aa17.49■□□□□ 0.39
C9orf3-218ENST00000482056 BAZ2AQ9UIF9 1905 aaKnown RBP17.49■□□□□ 0.39
C9orf3-218ENST00000482056 CASQ1P31415 396 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 GOLGA8FQ08AF8 430 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 GOLGA8DPQ0D2H9 430 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 FUT2Q10981 343 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 TMTC3Q6ZXV5 915 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 TC2NQ8N9U0 490 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 SPATA31A1Q5TZJ5 1347 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 SYNRGQ9UMZ2 1314 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 SCN7AQ01118 1682 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 A0A1B0GTH6 734 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 DYNLL1P63167 89 aaKnown RBP17.48■□□□□ 0.39
C9orf3-218ENST00000482056 NR1I3Q14994 352 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 FILIP1LQ4L180 1135 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 TTC38Q5R3I4 469 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 USP49Q70CQ1 688 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 SYMPKQ92797 1274 aaKnown RBP17.48■□□□□ 0.39
C9orf3-218ENST00000482056 PAGE5Q96GU1 130 aa17.48■□□□□ 0.39
C9orf3-218ENST00000482056 CRNKL1Q9BZJ0 848 aaKnown RBP17.48■□□□□ 0.39
C9orf3-218ENST00000482056 AKR1B15C9JRZ8 316 aaPredicted RBP17.47■□□□□ 0.39
C9orf3-218ENST00000482056 NPHP1O15259 732 aa17.47■□□□□ 0.39
C9orf3-218ENST00000482056 ORC4O43929 436 aa17.47■□□□□ 0.39
C9orf3-218ENST00000482056 PLEKHA8P1O95397 391 aa17.47■□□□□ 0.39
C9orf3-218ENST00000482056 H2AFXP16104 143 aaPredicted RBP17.47■□□□□ 0.39
C9orf3-218ENST00000482056 TROAPQ12815 778 aa17.47■□□□□ 0.39
C9orf3-218ENST00000482056 BMS1Q14692 1282 aaKnown RBP17.47■□□□□ 0.39
C9orf3-218ENST00000482056 ERFEQ4G0M1 354 aa17.47■□□□□ 0.39
C9orf3-218ENST00000482056 CTR9Q6PD62 1173 aa17.47■□□□□ 0.39
C9orf3-218ENST00000482056 TMED8Q6PL24 325 aaPredicted RBP17.47■□□□□ 0.39
C9orf3-218ENST00000482056 SH3RF1Q7Z6J0 888 aa17.47■□□□□ 0.39
C9orf3-218ENST00000482056 PPFIBP1Q86W92 1011 aa17.47■□□□□ 0.39
C9orf3-218ENST00000482056 EPSTI1Q96J88 318 aa17.47■□□□□ 0.39
C9orf3-218ENST00000482056 PANX2Q96RD6 677 aa17.47■□□□□ 0.39
C9orf3-218ENST00000482056 NAA15Q9BXJ9 866 aaKnown RBP17.47■□□□□ 0.39
C9orf3-218ENST00000482056 SAMSN1Q9NSI8 373 aaKnown RBP17.47■□□□□ 0.39
C9orf3-218ENST00000482056 PDS5AQ29RF7 1337 aaKnown RBP17.47■□□□□ 0.39
C9orf3-218ENST00000482056 COL1A1P02452 1464 aaPredicted RBP17.47■□□□□ 0.39
C9orf3-218ENST00000482056 VWA3AA6NCI4 1184 aa17.46■□□□□ 0.39
C9orf3-218ENST00000482056 EFCAB8A8MWE9 144 aa17.46■□□□□ 0.39
C9orf3-218ENST00000482056 PRDM1O75626 825 aa17.46■□□□□ 0.39
C9orf3-218ENST00000482056 KIF20AO95235 890 aa17.46■□□□□ 0.39
C9orf3-218ENST00000482056 AFMP43652 599 aa17.46■□□□□ 0.39
C9orf3-218ENST00000482056 TRAPPC10P48553 1259 aa17.46■□□□□ 0.39
C9orf3-218ENST00000482056 ARHGAP29Q52LW3 1261 aa17.46■□□□□ 0.39
C9orf3-218ENST00000482056 MINPP1Q9UNW1 487 aa17.46■□□□□ 0.39
C9orf3-218ENST00000482056 AHDC1Q5TGY3 1603 aaPredicted RBP17.46■□□□□ 0.39
C9orf3-218ENST00000482056 FAM205CA6NFA0 338 aa17.46■□□□□ 0.39
C9orf3-218ENST00000482056 GTF2E1P29083 439 aaPredicted RBP17.46■□□□□ 0.39
C9orf3-218ENST00000482056 ADKP55263 362 aaKnown RBP17.46■□□□□ 0.39
C9orf3-218ENST00000482056 FAM84BQ96KN1 310 aaPredicted RBP17.46■□□□□ 0.39
C9orf3-218ENST00000482056 MYH13Q9UKX3 1938 aa17.45■□□□□ 0.38
C9orf3-218ENST00000482056 CYP2D7A0A087X1C5 515 aa17.45■□□□□ 0.38
C9orf3-218ENST00000482056 USP17L12C9JPN9 530 aa17.45■□□□□ 0.38
C9orf3-218ENST00000482056 USP17L21D6R901 530 aa17.45■□□□□ 0.38
C9orf3-218ENST00000482056 LAMB1P07942 1786 aa17.45■□□□□ 0.38
C9orf3-218ENST00000482056 GNG11P61952 73 aa17.45■□□□□ 0.38
C9orf3-218ENST00000482056 ATP2C1P98194 919 aaPredicted RBP17.45■□□□□ 0.38
C9orf3-218ENST00000482056 ZNF174Q15697 407 aa17.45■□□□□ 0.38
C9orf3-218ENST00000482056 PTPN21Q16825 1174 aa17.45■□□□□ 0.38
C9orf3-218ENST00000482056 IQUBQ8NA54 791 aa17.45■□□□□ 0.38
C9orf3-218ENST00000482056 CNTNAP5Q8WYK1 1306 aa17.45■□□□□ 0.38
C9orf3-218ENST00000482056 ATP8A2Q9NTI2 1148 aa17.45■□□□□ 0.38
C9orf3-218ENST00000482056 ROBO1Q9Y6N7 1651 aa17.45■□□□□ 0.38
C9orf3-218ENST00000482056 COL5A3P25940 1745 aaPredicted RBP17.45■□□□□ 0.38
C9orf3-218ENST00000482056 RGL2O15211 777 aa17.44■□□□□ 0.38
C9orf3-218ENST00000482056 DPYDQ12882 1025 aa17.44■□□□□ 0.38
C9orf3-218ENST00000482056 KLHL10Q6JEL2 608 aa17.44■□□□□ 0.38
C9orf3-218ENST00000482056 MARCH10Q8NA82 808 aaPredicted RBP17.44■□□□□ 0.38
C9orf3-218ENST00000482056 TNFRSF25Q93038 417 aa17.44■□□□□ 0.38
C9orf3-218ENST00000482056 SHISA4Q96DD7 197 aa17.44■□□□□ 0.38
C9orf3-218ENST00000482056 FAM53CQ9NYF3 392 aa17.44■□□□□ 0.38
C9orf3-218ENST00000482056 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.44■□□□□ 0.38
C9orf3-218ENST00000482056 PARP3Q9Y6F1 533 aa17.44■□□□□ 0.38
C9orf3-218ENST00000482056 A0A087X0B3 334 aa17.44■□□□□ 0.38
C9orf3-218ENST00000482056 hCG_1642624A0A1W2PR95 340 aa17.44■□□□□ 0.38
C9orf3-218ENST00000482056 CCDC175P0C221 793 aa17.44■□□□□ 0.38
C9orf3-218ENST00000482056 KIF5BP33176 963 aa17.44■□□□□ 0.38
C9orf3-218ENST00000482056 NT5C2P49902 561 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms