RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 UBE4AQ14139 1066 aa8.09□□□□□ -1.11
USP48-208ENST00000479177 PRICKLE2Q7Z3G6 844 aa8.09□□□□□ -1.11
USP48-208ENST00000479177 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.09□□□□□ -1.11
USP48-208ENST00000479177 XAGE2Q96GT9 111 aa8.09□□□□□ -1.11
USP48-208ENST00000479177 NEUROD6Q96NK8 337 aa8.09□□□□□ -1.11
USP48-208ENST00000479177 ANKRD2Q9GZV1 360 aa8.09□□□□□ -1.11
USP48-208ENST00000479177 ETNK1Q9HBU6 452 aa8.09□□□□□ -1.11
USP48-208ENST00000479177 MYH13Q9UKX3 1938 aa8.09□□□□□ -1.11
USP48-208ENST00000479177 ZNF804BA4D1E1 1349 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 XDHP47989 1333 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 IRS2Q9Y4H2 1338 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 USP17L3A6NCW0 530 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 USP17L4A6NCW7 530 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 H0YIN7 160 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 ATP9BO43861 1147 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 CDC45O75419 566 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 IFIT1P09914 478 aaKnown RBP8.08□□□□□ -1.12
USP48-208ENST00000479177 ARID4AP29374 1257 aaPredicted RBP8.08□□□□□ -1.12
USP48-208ENST00000479177 RNF144AP50876 292 aaPredicted RBP8.08□□□□□ -1.12
USP48-208ENST00000479177 SCNN1DP51172 638 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 SRSF11Q05519 484 aaKnown RBP8.08□□□□□ -1.12
USP48-208ENST00000479177 EML3Q32P44 896 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 PRPF40BQ6NWY9 871 aaKnown RBP8.08□□□□□ -1.12
USP48-208ENST00000479177 USP17L2Q6R6M4 530 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 USP17L1Q7RTZ2 530 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 CNKSR1Q969H4 720 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 SPOCK3Q9BQ16 436 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 BACH2Q9BYV9 841 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 PCDHGA11Q9Y5H2 935 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 HRH3Q9Y5N1 445 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 SNED1Q8TER0 1413 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 RFX7Q2KHR2 1363 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 DOCK2Q92608 1830 aa8.08□□□□□ -1.12
USP48-208ENST00000479177 MYH7P12883 1935 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 COL1A1P02452 1464 aaPredicted RBP8.07□□□□□ -1.12
USP48-208ENST00000479177 PALM3A6NDB9 673 aaPredicted RBP8.07□□□□□ -1.12
USP48-208ENST00000479177 WTIPA6NIX2 430 aaPredicted RBP8.07□□□□□ -1.12
USP48-208ENST00000479177 MSTNO14793 375 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 MAP4K4O95819 1239 aaPredicted RBP8.07□□□□□ -1.12
USP48-208ENST00000479177 KLRK1P26718 216 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 ALDH1B1P30837 517 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 PHKA1P46020 1223 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 KCNJ4P48050 445 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 GPSM2P81274 684 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 CCDC158Q5M9N0 1113 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 TTC39AQ5SRH9 613 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 GORABQ5T7V8 394 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 CCDC102BQ68D86 513 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 ZNF622Q969S3 477 aaKnown RBP eCLIP8.07□□□□□ -1.12
USP48-208ENST00000479177 ZNF512BQ96KM6 892 aaPredicted RBP8.07□□□□□ -1.12
USP48-208ENST00000479177 HAUS7Q99871 368 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 BOLA2Q9H3K6 86 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 PODXL2Q9NZ53 605 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 ATP6V0A2Q9Y487 856 aa8.07□□□□□ -1.12
USP48-208ENST00000479177 TMEM229AB2RXF0 380 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 UFL1O94874 794 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 UQCRFS1P1P0C7P4 283 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 DPEP1P16444 411 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 ATP2B4P23634 1241 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 MCAMP43121 646 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 GDF10P55107 478 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 GTF2IP78347 998 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 CENPCQ03188 943 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 POU4F2Q12837 409 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 RASGRF1Q13972 1273 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 C15orf52Q6ZUT6 534 aaKnown RBP8.06□□□□□ -1.12
USP48-208ENST00000479177 LYSMD3Q7Z3D4 306 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 SP8Q8IXZ3 490 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 CNTROBQ8N137 903 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 EVI5LQ96CN4 794 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 EDC3Q96F86 508 aaKnown RBP8.06□□□□□ -1.12
USP48-208ENST00000479177 DNAJC2Q99543 621 aaKnown RBP8.06□□□□□ -1.12
USP48-208ENST00000479177 ESYT1Q9BSJ8 1104 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 KRTAP4-8Q9BYQ9 185 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 ANKIB1Q9P2G1 1089 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 KIAA1024Q9UPX6 916 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 LEMD3Q9Y2U8 911 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 MED23Q9ULK4 1368 aa8.06□□□□□ -1.12
USP48-208ENST00000479177 MYO5AQ9Y4I1 1855 aaKnown RBP8.06□□□□□ -1.12
USP48-208ENST00000479177 MAST2Q6P0Q8 1798 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 PROCP04070 461 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 KCNA3P22001 575 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 GYG1P46976 350 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 TGFB2P61812 414 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 CLDN10P78369 228 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 OLFM4Q6UX06 510 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 PI16Q6UXB8 463 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 FBXO33Q7Z6M2 555 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 TBC1D16Q8TBP0 767 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 C7orf43Q8WVR3 580 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 RILPL2Q969X0 211 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 PPP1R12CQ9BZL4 782 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 FHDC1Q9C0D6 1143 aaPredicted RBP8.05□□□□□ -1.12
USP48-208ENST00000479177 GRIP2Q9C0E4 1043 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 PAG1Q9NWQ8 432 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 SERTAD1Q9UHV2 236 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 GGA1Q9UJY5 639 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 NOD1Q9Y239 953 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 CD2APQ9Y5K6 639 aa8.05□□□□□ -1.12
USP48-208ENST00000479177 MAFBQ9Y5Q3 323 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms