RNA–Protein interactions for RNA: ENST00000475944.1

CDRT1-205, CMT1A duplicated region transcript 1, humanhuman

TSL 3

Gene CDRT1, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-205ENST00000475944 CACNB2Q08289 660 aaPredicted RBP13.18□□□□□ -0.3
CDRT1-205ENST00000475944 USP17L24Q0WX57 530 aa13.18□□□□□ -0.3
CDRT1-205ENST00000475944 RAB3GAP1Q15042 981 aa13.18□□□□□ -0.3
CDRT1-205ENST00000475944 CERKLQ49MI3 558 aaPredicted RBP13.18□□□□□ -0.3
CDRT1-205ENST00000475944 MORN1Q5T089 497 aa13.18□□□□□ -0.3
CDRT1-205ENST00000475944 CEP85Q6P2H3 762 aa13.18□□□□□ -0.3
CDRT1-205ENST00000475944 AACSQ86V21 672 aa13.18□□□□□ -0.3
CDRT1-205ENST00000475944 USP6NLQ92738 828 aa13.18□□□□□ -0.3
CDRT1-205ENST00000475944 KIAA1683Q9H0B3 1180 aa13.18□□□□□ -0.3
CDRT1-205ENST00000475944 CABP5Q9NP86 173 aa13.18□□□□□ -0.3
CDRT1-205ENST00000475944 ZMYND8Q9ULU4 1186 aaPredicted RBP13.18□□□□□ -0.3
CDRT1-205ENST00000475944 RABGAP1Q9Y3P9 1069 aa13.18□□□□□ -0.3
CDRT1-205ENST00000475944 MNX1P50219 401 aaPredicted RBP13.17□□□□□ -0.3
CDRT1-205ENST00000475944 TTF1Q15361 905 aaPredicted RBP13.17□□□□□ -0.3
CDRT1-205ENST00000475944 ABCB5Q2M3G0 1257 aa13.17□□□□□ -0.3
CDRT1-205ENST00000475944 HSP90AB4PQ58FF6 505 aa13.17□□□□□ -0.3
CDRT1-205ENST00000475944 ANTXR1Q9H6X2 564 aa13.17□□□□□ -0.3
CDRT1-205ENST00000475944 NDUFB9Q9Y6M9 179 aa13.17□□□□□ -0.3
CDRT1-205ENST00000475944 SOX1O00570 391 aaPredicted RBP13.16□□□□□ -0.3
CDRT1-205ENST00000475944 VCAM1P19320 739 aa13.16□□□□□ -0.3
CDRT1-205ENST00000475944 MAP2K5Q13163 448 aa13.16□□□□□ -0.3
CDRT1-205ENST00000475944 CCL14Q16627 93 aa13.16□□□□□ -0.3
CDRT1-205ENST00000475944 LBX2Q6XYB7 198 aa13.16□□□□□ -0.3
CDRT1-205ENST00000475944 CATSPERGQ6ZRH7 1159 aa13.16□□□□□ -0.3
CDRT1-205ENST00000475944 LRCH3Q96II8 777 aa13.16□□□□□ -0.3
CDRT1-205ENST00000475944 EXOC6BQ9Y2D4 811 aa13.16□□□□□ -0.3
CDRT1-205ENST00000475944 IVNS1ABPQ9Y6Y0 642 aa13.16□□□□□ -0.3
CDRT1-205ENST00000475944 RANBP2P49792 3224 aaKnown RBP13.16□□□□□ -0.3
CDRT1-205ENST00000475944 PFASO15067 1338 aa13.15□□□□□ -0.3
CDRT1-205ENST00000475944 MAGEB6P1A0A0J9YX57 407 aa13.15□□□□□ -0.3
CDRT1-205ENST00000475944 SLC15A5A6NIM6 579 aa13.15□□□□□ -0.3
CDRT1-205ENST00000475944 CNMDO75829 334 aa13.15□□□□□ -0.3
CDRT1-205ENST00000475944 POLR3DP05423 398 aaPredicted RBP13.15□□□□□ -0.3
CDRT1-205ENST00000475944 SYN1P17600 705 aa13.15□□□□□ -0.3
CDRT1-205ENST00000475944 CCND3P30281 292 aaPredicted RBP13.15□□□□□ -0.3
CDRT1-205ENST00000475944 PLCD1P51178 756 aa13.15□□□□□ -0.3
CDRT1-205ENST00000475944 WDR78Q5VTH9 848 aa13.15□□□□□ -0.3
CDRT1-205ENST00000475944 MFSD14CQ5VZR4 134 aa13.15□□□□□ -0.3
CDRT1-205ENST00000475944 POTEEQ6S8J3 1075 aa13.15□□□□□ -0.3
CDRT1-205ENST00000475944 EDC3Q96F86 508 aaKnown RBP13.15□□□□□ -0.3
CDRT1-205ENST00000475944 RIOK1Q9BRS2 568 aaKnown RBP13.15□□□□□ -0.3
CDRT1-205ENST00000475944 CRNKL1Q9BZJ0 848 aaKnown RBP13.15□□□□□ -0.3
CDRT1-205ENST00000475944 SZT2Q5T011 3432 aa13.15□□□□□ -0.3
CDRT1-205ENST00000475944 COL6A1P12109 1028 aa13.14□□□□□ -0.31
CDRT1-205ENST00000475944 PTPREP23469 700 aa13.14□□□□□ -0.31
CDRT1-205ENST00000475944 SHMT1P34896 483 aa13.14□□□□□ -0.31
CDRT1-205ENST00000475944 MAGEA10P43363 369 aaPredicted RBP13.14□□□□□ -0.31
CDRT1-205ENST00000475944 LHX8Q68G74 356 aa13.14□□□□□ -0.31
CDRT1-205ENST00000475944 GPR153Q6NV75 609 aa13.14□□□□□ -0.31
CDRT1-205ENST00000475944 RHPN1Q8TCX5 695 aa13.14□□□□□ -0.31
CDRT1-205ENST00000475944 ACER1Q8TDN7 264 aa13.14□□□□□ -0.31
CDRT1-205ENST00000475944 RPAP3Q9H6T3 665 aaPredicted RBP13.14□□□□□ -0.31
CDRT1-205ENST00000475944 IL1RAPL2Q9NP60 686 aa13.14□□□□□ -0.31
CDRT1-205ENST00000475944 NAV1Q8NEY1 1877 aa13.14□□□□□ -0.31
CDRT1-205ENST00000475944 SPDYE16A6NNV3 312 aaPredicted RBP13.13□□□□□ -0.31
CDRT1-205ENST00000475944 MSCO60682 206 aa13.13□□□□□ -0.31
CDRT1-205ENST00000475944 GABPAQ06546 454 aa13.13□□□□□ -0.31
CDRT1-205ENST00000475944 LRIT3Q3SXY7 679 aa13.13□□□□□ -0.31
CDRT1-205ENST00000475944 SLC9C2Q5TAH2 1124 aa13.13□□□□□ -0.31
CDRT1-205ENST00000475944 TDHQ8IZJ6 230 aa13.13□□□□□ -0.31
CDRT1-205ENST00000475944 CLASRPQ8N2M8 674 aaKnown RBP13.13□□□□□ -0.31
CDRT1-205ENST00000475944 KIF1BPQ96EK5 621 aa13.13□□□□□ -0.31
CDRT1-205ENST00000475944 MCM9Q9NXL9 1143 aa13.13□□□□□ -0.31
CDRT1-205ENST00000475944 BTBD7Q9P203 1132 aa13.13□□□□□ -0.31
CDRT1-205ENST00000475944 MPHOSPH10O00566 681 aaKnown RBP13.12□□□□□ -0.31
CDRT1-205ENST00000475944 HOXC6P09630 235 aa13.12□□□□□ -0.31
CDRT1-205ENST00000475944 MS4A1P11836 297 aa13.12□□□□□ -0.31
CDRT1-205ENST00000475944 PDE6AP16499 860 aa13.12□□□□□ -0.31
CDRT1-205ENST00000475944 ATP2B2Q01814 1243 aa13.12□□□□□ -0.31
CDRT1-205ENST00000475944 GRB14Q14449 540 aa13.12□□□□□ -0.31
CDRT1-205ENST00000475944 SEPT2Q15019 361 aa13.12□□□□□ -0.31
CDRT1-205ENST00000475944 LRRC26Q2I0M4 334 aa13.12□□□□□ -0.31
CDRT1-205ENST00000475944 SLC17A8Q8NDX2 589 aa13.12□□□□□ -0.31
CDRT1-205ENST00000475944 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.12□□□□□ -0.31
CDRT1-205ENST00000475944 UBE2OQ9C0C9 1292 aaKnown RBP13.12□□□□□ -0.31
CDRT1-205ENST00000475944 FRMPD3Q5JV73 1810 aa13.11□□□□□ -0.31
CDRT1-205ENST00000475944 GOLIM4O00461 696 aa13.11□□□□□ -0.31
CDRT1-205ENST00000475944 HMMRO75330 724 aa13.11□□□□□ -0.31
CDRT1-205ENST00000475944 IFIT2P09913 472 aaKnown RBP13.11□□□□□ -0.31
CDRT1-205ENST00000475944 CNGA1P29973 690 aa13.11□□□□□ -0.31
CDRT1-205ENST00000475944 GUCY1A2P33402 732 aa13.11□□□□□ -0.31
CDRT1-205ENST00000475944 COG2Q14746 738 aa13.11□□□□□ -0.31
CDRT1-205ENST00000475944 PANK1Q8TE04 598 aa13.11□□□□□ -0.31
CDRT1-205ENST00000475944 DNAJC2Q99543 621 aaKnown RBP13.11□□□□□ -0.31
CDRT1-205ENST00000475944 DCP1AQ9NPI6 582 aaPredicted RBP13.11□□□□□ -0.31
CDRT1-205ENST00000475944 HOXC10Q9NYD6 342 aa13.11□□□□□ -0.31
CDRT1-205ENST00000475944 FLRT1Q9NZU1 646 aa13.11□□□□□ -0.31
CDRT1-205ENST00000475944 SWAP70Q9UH65 585 aa13.11□□□□□ -0.31
CDRT1-205ENST00000475944 DDX20Q9UHI6 824 aaKnown RBP13.11□□□□□ -0.31
CDRT1-205ENST00000475944 ZNF532Q9HCE3 1301 aa13.11□□□□□ -0.31
CDRT1-205ENST00000475944 STRNO43815 780 aa13.1□□□□□ -0.31
CDRT1-205ENST00000475944 TMEM179Q6ZVK1 233 aa13.1□□□□□ -0.31
CDRT1-205ENST00000475944 DPP9Q86TI2 863 aa13.1□□□□□ -0.31
CDRT1-205ENST00000475944 RPAP2Q8IXW5 612 aaPredicted RBP13.1□□□□□ -0.31
CDRT1-205ENST00000475944 DEFB123Q8N688 67 aa13.1□□□□□ -0.31
CDRT1-205ENST00000475944 MB21D1Q8N884 522 aa13.1□□□□□ -0.31
CDRT1-205ENST00000475944 NPLOC4Q8TAT6 608 aa13.1□□□□□ -0.31
CDRT1-205ENST00000475944 SDR42E1Q8WUS8 393 aa13.1□□□□□ -0.31
CDRT1-205ENST00000475944 LPAR1Q92633 364 aa13.1□□□□□ -0.31
CDRT1-205ENST00000475944 TANGO6Q9C0B7 1094 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms