RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 ATP8A2Q9NTI2 1148 aa22.42■■□□□ 1.18
COL7A1-209ENST00000474432 CYP2D7A0A087X1C5 515 aa22.41■■□□□ 1.18
COL7A1-209ENST00000474432 A0A1W2PRG0 241 aa22.41■■□□□ 1.18
COL7A1-209ENST00000474432 GJA8P48165 433 aa22.41■■□□□ 1.18
COL7A1-209ENST00000474432 ZYXQ15942 572 aaKnown RBP22.41■■□□□ 1.18
COL7A1-209ENST00000474432 UBE2Q1Q7Z7E8 422 aa22.41■■□□□ 1.18
COL7A1-209ENST00000474432 INHAP05111 366 aa22.4■■□□□ 1.18
COL7A1-209ENST00000474432 C12orf60Q5U649 245 aa22.4■■□□□ 1.18
COL7A1-209ENST00000474432 SIAH1Q8IUQ4 282 aa22.4■■□□□ 1.18
COL7A1-209ENST00000474432 RNF208Q9H0X6 261 aa22.4■■□□□ 1.18
COL7A1-209ENST00000474432 CABP5Q9NP86 173 aa22.4■■□□□ 1.18
COL7A1-209ENST00000474432 BIN2Q9UBW5 565 aaPredicted RBP22.4■■□□□ 1.18
COL7A1-209ENST00000474432 RLFQ13129 1914 aa22.39■■□□□ 1.18
COL7A1-209ENST00000474432 CNMDO75829 334 aa22.39■■□□□ 1.17
COL7A1-209ENST00000474432 VCAM1P19320 739 aa22.39■■□□□ 1.17
COL7A1-209ENST00000474432 UBXN2AP68543 259 aa22.39■■□□□ 1.17
COL7A1-209ENST00000474432 CATSPERGQ6ZRH7 1159 aa22.39■■□□□ 1.17
COL7A1-209ENST00000474432 KBTBD3Q8NAB2 608 aa22.39■■□□□ 1.17
COL7A1-209ENST00000474432 GPRC5AQ8NFJ5 357 aa22.39■■□□□ 1.17
COL7A1-209ENST00000474432 OTUD7AQ8TE49 926 aaPredicted RBP22.39■■□□□ 1.17
COL7A1-209ENST00000474432 USP17L15C9J2P7 530 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 USP17L13C9JLJ4 530 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 USP17L12C9JPN9 530 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 USP17L11C9JVI0 530 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 USP17L21D6R901 530 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 USP17L18D6R9N7 530 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 USP17L22D6RA61 530 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 USP17L17D6RBQ6 530 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 USP17L19D6RCP7 530 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 USP17L20D6RJB6 530 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 USP14P54578 494 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 USP17L24Q0WX57 530 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 STRBPQ96SI9 672 aaKnown RBP22.38■■□□□ 1.17
COL7A1-209ENST00000474432 CRBNQ96SW2 442 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 FEZ1Q99689 392 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 PORCNQ9H237 461 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 SWAP70Q9UH65 585 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 TAOK2Q9UL54 1235 aa22.38■■□□□ 1.17
COL7A1-209ENST00000474432 AKR1B1P15121 316 aa22.37■■□□□ 1.17
COL7A1-209ENST00000474432 ERVK-9P63128 1117 aa22.37■■□□□ 1.17
COL7A1-209ENST00000474432 ERVK-24P63145 666 aa22.37■■□□□ 1.17
COL7A1-209ENST00000474432 KIAA1755Q5JYT7 1200 aa22.37■■□□□ 1.17
COL7A1-209ENST00000474432 ZSCAN25Q6NSZ9 544 aa22.37■■□□□ 1.17
COL7A1-209ENST00000474432 U2AF1L4Q8WU68 220 aaKnown RBP22.37■■□□□ 1.17
COL7A1-209ENST00000474432 OSBP2Q969R2 916 aa22.37■■□□□ 1.17
COL7A1-209ENST00000474432 SLC4A4Q9Y6R1 1079 aa22.37■■□□□ 1.17
COL7A1-209ENST00000474432 CDK8P49336 464 aa22.36■■□□□ 1.17
COL7A1-209ENST00000474432 TRIM32Q13049 653 aa22.36■■□□□ 1.17
COL7A1-209ENST00000474432 CTR9Q6PD62 1173 aa22.36■■□□□ 1.17
COL7A1-209ENST00000474432 CLEC10AQ8IUN9 316 aa22.36■■□□□ 1.17
COL7A1-209ENST00000474432 PI4K2BQ8TCG2 481 aa22.36■■□□□ 1.17
COL7A1-209ENST00000474432 USP6NLQ92738 828 aa22.36■■□□□ 1.17
COL7A1-209ENST00000474432 PAK6Q9NQU5 681 aaPredicted RBP22.36■■□□□ 1.17
COL7A1-209ENST00000474432 CEP290O15078 2479 aa22.36■■□□□ 1.17
COL7A1-209ENST00000474432 SALL3Q9BXA9 1300 aa22.35■■□□□ 1.17
COL7A1-209ENST00000474432 MPHOSPH10O00566 681 aaKnown RBP22.35■■□□□ 1.17
COL7A1-209ENST00000474432 SLC34A2O95436 690 aa22.35■■□□□ 1.17
COL7A1-209ENST00000474432 SGPL1O95470 568 aa22.35■■□□□ 1.17
COL7A1-209ENST00000474432 LBX2Q6XYB7 198 aa22.35■■□□□ 1.17
COL7A1-209ENST00000474432 TMEM179Q6ZVK1 233 aa22.35■■□□□ 1.17
COL7A1-209ENST00000474432 C16orf86Q6ZW13 317 aa22.35■■□□□ 1.17
COL7A1-209ENST00000474432 NKX2-3Q8TAU0 364 aa22.35■■□□□ 1.17
COL7A1-209ENST00000474432 GTF3C2Q8WUA4 911 aaPredicted RBP22.35■■□□□ 1.17
COL7A1-209ENST00000474432 PAGR1Q9BTK6 254 aa22.35■■□□□ 1.17
COL7A1-209ENST00000474432 RABGAP1Q9Y3P9 1069 aa22.35■■□□□ 1.17
COL7A1-209ENST00000474432 GREB1LQ9C091 1923 aaPredicted RBP22.34■■□□□ 1.17
COL7A1-209ENST00000474432 GSG1L2A8MUP6 293 aa22.34■■□□□ 1.17
COL7A1-209ENST00000474432 TRIB2Q92519 343 aa22.34■■□□□ 1.17
COL7A1-209ENST00000474432 RPAP3Q9H6T3 665 aaPredicted RBP22.34■■□□□ 1.17
COL7A1-209ENST00000474432 BTBD7Q9P203 1132 aa22.34■■□□□ 1.17
COL7A1-209ENST00000474432 TTC41PQ6P2S7 1318 aa22.33■■□□□ 1.17
COL7A1-209ENST00000474432 SPDYE16A6NNV3 312 aaPredicted RBP22.33■■□□□ 1.17
COL7A1-209ENST00000474432 RNF113AO15541 343 aaKnown RBP22.33■■□□□ 1.17
COL7A1-209ENST00000474432 APPBP2Q92624 585 aa22.33■■□□□ 1.17
COL7A1-209ENST00000474432 GPATCH3Q96I76 525 aa22.33■■□□□ 1.17
COL7A1-209ENST00000474432 CRISPLD2Q9H0B8 497 aa22.33■■□□□ 1.17
COL7A1-209ENST00000474432 PARP14Q460N5 1801 aa22.33■■□□□ 1.16
COL7A1-209ENST00000474432 A0A0G2JMZ2 1700 aa22.32■■□□□ 1.16
COL7A1-209ENST00000474432 HMGCRP04035 888 aa22.32■■□□□ 1.16
COL7A1-209ENST00000474432 CYP2B6P20813 491 aa22.32■■□□□ 1.16
COL7A1-209ENST00000474432 MAPK4P31152 587 aa22.32■■□□□ 1.16
COL7A1-209ENST00000474432 SBK1Q52WX2 424 aa22.32■■□□□ 1.16
COL7A1-209ENST00000474432 MORN1Q5T089 497 aa22.32■■□□□ 1.16
COL7A1-209ENST00000474432 GPR142Q7Z601 462 aa22.32■■□□□ 1.16
COL7A1-209ENST00000474432 CCDC17Q96LX7 622 aa22.32■■□□□ 1.16
COL7A1-209ENST00000474432 DEFB118Q96PH6 123 aa22.32■■□□□ 1.16
COL7A1-209ENST00000474432 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.32■■□□□ 1.16
COL7A1-209ENST00000474432 TMX2Q9Y320 296 aa22.32■■□□□ 1.16
COL7A1-209ENST00000474432 M0R2C6 588 aa22.31■■□□□ 1.16
COL7A1-209ENST00000474432 XRCC5P13010 732 aaKnown RBP22.31■■□□□ 1.16
COL7A1-209ENST00000474432 MAP3K21Q5TCX8 1036 aa22.31■■□□□ 1.16
COL7A1-209ENST00000474432 YTHDC1Q96MU7 727 aaKnown RBP22.31■■□□□ 1.16
COL7A1-209ENST00000474432 NUDT12Q9BQG2 462 aa22.31■■□□□ 1.16
COL7A1-209ENST00000474432 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.31■■□□□ 1.16
COL7A1-209ENST00000474432 EPB41L4AQ9HCS5 686 aaPredicted RBP22.31■■□□□ 1.16
COL7A1-209ENST00000474432 PLEKHH3Q7Z736 793 aa22.3■■□□□ 1.16
COL7A1-209ENST00000474432 ARPP21Q9UBL0 812 aaPredicted RBP22.3■■□□□ 1.16
COL7A1-209ENST00000474432 GPAA1O43292 621 aa22.29■■□□□ 1.16
COL7A1-209ENST00000474432 ZFYP08048 801 aaPredicted RBP22.29■■□□□ 1.16
COL7A1-209ENST00000474432 ICA1Q05084 483 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms