RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ASB16Q96NS5 453 aa6.95□□□□□ -1.3
CCDC88A-212ENST00000474059 RNF32Q9H0A6 362 aa6.95□□□□□ -1.3
CCDC88A-212ENST00000474059 B8ZZF3 427 aa6.94□□□□□ -1.3
CCDC88A-212ENST00000474059 SRFP11831 508 aa6.94□□□□□ -1.3
CCDC88A-212ENST00000474059 TMPRSS7Q7RTY8 843 aa6.94□□□□□ -1.3
CCDC88A-212ENST00000474059 PIWIL2Q8TC59 973 aaKnown RBP6.94□□□□□ -1.3
CCDC88A-212ENST00000474059 MYLIPQ8WY64 445 aa6.94□□□□□ -1.3
CCDC88A-212ENST00000474059 RNF19AQ9NV58 838 aa6.94□□□□□ -1.3
CCDC88A-212ENST00000474059 P4HBP07237 508 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-212ENST00000474059 TMEM253P0C7T8 217 aa6.93□□□□□ -1.3
CCDC88A-212ENST00000474059 LINC00310P59036 64 aa6.93□□□□□ -1.3
CCDC88A-212ENST00000474059 ZNF746Q6NUN9 644 aaPredicted RBP6.93□□□□□ -1.3
CCDC88A-212ENST00000474059 CCDC120Q96HB5 630 aa6.93□□□□□ -1.3
CCDC88A-212ENST00000474059 COX4I2Q96KJ9 171 aa6.93□□□□□ -1.3
CCDC88A-212ENST00000474059 TACC3Q9Y6A5 838 aa6.93□□□□□ -1.3
CCDC88A-212ENST00000474059 MYOCOSA0A1B0GUC4 107 aa6.92□□□□□ -1.3
CCDC88A-212ENST00000474059 ZGLP1P0C6A0 271 aa6.92□□□□□ -1.3
CCDC88A-212ENST00000474059 CREG2Q8IUH2 290 aa6.92□□□□□ -1.3
CCDC88A-212ENST00000474059 ACSF2Q96CM8 615 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-212ENST00000474059 TMEM87BQ96K49 555 aa6.92□□□□□ -1.3
CCDC88A-212ENST00000474059 C19orf44Q9H6X5 657 aa6.92□□□□□ -1.3
CCDC88A-212ENST00000474059 EBF1Q9UH73 591 aa6.92□□□□□ -1.3
CCDC88A-212ENST00000474059 TTF2Q9UNY4 1162 aaKnown RBP6.92□□□□□ -1.3
CCDC88A-212ENST00000474059 RAC2P15153 192 aa6.91□□□□□ -1.3
CCDC88A-212ENST00000474059 HOXA5P20719 270 aa6.91□□□□□ -1.3
CCDC88A-212ENST00000474059 RPS26P62854 115 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-212ENST00000474059 AGMOQ6ZNB7 445 aa6.91□□□□□ -1.3
CCDC88A-212ENST00000474059 ARID3AQ99856 593 aa6.91□□□□□ -1.3
CCDC88A-212ENST00000474059 MCOLN1Q9GZU1 580 aa6.91□□□□□ -1.3
CCDC88A-212ENST00000474059 SPG7Q9UQ90 795 aa6.91□□□□□ -1.3
CCDC88A-212ENST00000474059 TCAF2A6NFQ2 919 aa6.9□□□□□ -1.3
CCDC88A-212ENST00000474059 BRD1O95696 1058 aa6.9□□□□□ -1.3
CCDC88A-212ENST00000474059 EFEMP2O95967 443 aa6.9□□□□□ -1.3
CCDC88A-212ENST00000474059 PGRP06401 933 aa6.9□□□□□ -1.3
CCDC88A-212ENST00000474059 TPP2P29144 1249 aaPredicted RBP6.9□□□□□ -1.3
CCDC88A-212ENST00000474059 TFE3P19532 575 aaPredicted RBP6.89□□□□□ -1.31
CCDC88A-212ENST00000474059 CYP7A1P22680 504 aa6.89□□□□□ -1.31
CCDC88A-212ENST00000474059 SLC6A19Q695T7 634 aa6.89□□□□□ -1.31
CCDC88A-212ENST00000474059 C14orf37Q86TY3 774 aa6.89□□□□□ -1.31
CCDC88A-212ENST00000474059 MCATQ8IVS2 390 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-212ENST00000474059 DTWD2Q8NBA8 298 aa6.89□□□□□ -1.31
CCDC88A-212ENST00000474059 SLC26A8Q96RN1 970 aa6.89□□□□□ -1.31
CCDC88A-212ENST00000474059 GPR62Q9BZJ7 368 aa6.89□□□□□ -1.31
CCDC88A-212ENST00000474059 GCM1Q9NP62 436 aa6.89□□□□□ -1.31
CCDC88A-212ENST00000474059 LIG3P49916 1009 aa6.88□□□□□ -1.31
CCDC88A-212ENST00000474059 CIAPIN1Q6FI81 312 aa6.88□□□□□ -1.31
CCDC88A-212ENST00000474059 TSPYL5Q86VY4 417 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-212ENST00000474059 SHISA4Q96DD7 197 aa6.88□□□□□ -1.31
CCDC88A-212ENST00000474059 CEP131Q9UPN4 1083 aa6.88□□□□□ -1.31
CCDC88A-212ENST00000474059 CORINQ9Y5Q5 1042 aa6.88□□□□□ -1.31
CCDC88A-212ENST00000474059 NOTOA8MTQ0 251 aa6.87□□□□□ -1.31
CCDC88A-212ENST00000474059 NUAK1O60285 661 aa6.87□□□□□ -1.31
CCDC88A-212ENST00000474059 LRRN2O75325 713 aa6.87□□□□□ -1.31
CCDC88A-212ENST00000474059 EGR3Q06889 387 aa6.87□□□□□ -1.31
CCDC88A-212ENST00000474059 CCDC85BQ15834 202 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-212ENST00000474059 ZSCAN29Q8IWY8 852 aaPredicted RBP6.87□□□□□ -1.31
CCDC88A-212ENST00000474059 PDZD8Q8NEN9 1154 aa6.87□□□□□ -1.31
CCDC88A-212ENST00000474059 KCNN1Q92952 543 aa6.87□□□□□ -1.31
CCDC88A-212ENST00000474059 ZNF281Q9Y2X9 895 aa6.87□□□□□ -1.31
CCDC88A-212ENST00000474059 PCDHA11Q9Y5I1 949 aa6.87□□□□□ -1.31
CCDC88A-212ENST00000474059 UPK3BL1B0FP48 263 aa6.86□□□□□ -1.31
CCDC88A-212ENST00000474059 UPK3BL2E5RIL1 263 aa6.86□□□□□ -1.31
CCDC88A-212ENST00000474059 GNA15P30679 374 aa6.86□□□□□ -1.31
CCDC88A-212ENST00000474059 ETV3P41162 512 aa6.86□□□□□ -1.31
CCDC88A-212ENST00000474059 CTSWP56202 376 aa6.86□□□□□ -1.31
CCDC88A-212ENST00000474059 IRF2BP1Q8IU81 584 aa6.86□□□□□ -1.31
CCDC88A-212ENST00000474059 IRF2BPLQ9H1B7 796 aa6.86□□□□□ -1.31
CCDC88A-212ENST00000474059 DUSP13Q9UII6 198 aa6.86□□□□□ -1.31
CCDC88A-212ENST00000474059 ADAM30Q9UKF2 790 aa6.86□□□□□ -1.31
CCDC88A-212ENST00000474059 A0A0G2JLL6 359 aaPredicted RBP6.85□□□□□ -1.31
CCDC88A-212ENST00000474059 LDHBP07195 334 aaKnown RBP6.85□□□□□ -1.31
CCDC88A-212ENST00000474059 DLG4P78352 724 aa6.85□□□□□ -1.31
CCDC88A-212ENST00000474059 ATP2B2Q01814 1243 aa6.85□□□□□ -1.31
CCDC88A-212ENST00000474059 NR0B2Q15466 257 aa6.85□□□□□ -1.31
CCDC88A-212ENST00000474059 MAP3K11Q16584 847 aa6.85□□□□□ -1.31
CCDC88A-212ENST00000474059 MEI1Q5TIA1 1274 aa6.85□□□□□ -1.31
CCDC88A-212ENST00000474059 KRTAP5-3Q6L8H2 238 aa6.85□□□□□ -1.31
CCDC88A-212ENST00000474059 G6PC3Q9BUM1 346 aa6.85□□□□□ -1.31
CCDC88A-212ENST00000474059 YBX2Q9Y2T7 364 aaKnown RBP6.85□□□□□ -1.31
CCDC88A-212ENST00000474059 SHISA3A0PJX4 238 aa6.84□□□□□ -1.31
CCDC88A-212ENST00000474059 GALK1P51570 392 aa6.84□□□□□ -1.31
CCDC88A-212ENST00000474059 KRTAP10-2P60368 255 aa6.84□□□□□ -1.31
CCDC88A-212ENST00000474059 TEKQ02763 1124 aa6.84□□□□□ -1.31
CCDC88A-212ENST00000474059 RPL6Q02878 288 aaKnown RBP6.84□□□□□ -1.31
CCDC88A-212ENST00000474059 PDE4CQ08493 712 aa6.84□□□□□ -1.31
CCDC88A-212ENST00000474059 BAHD1Q8TBE0 780 aaPredicted RBP6.84□□□□□ -1.31
CCDC88A-212ENST00000474059 CYB5D2Q8WUJ1 264 aa6.84□□□□□ -1.31
CCDC88A-212ENST00000474059 INTS4Q96HW7 963 aaKnown RBP6.84□□□□□ -1.31
CCDC88A-212ENST00000474059 KCNC2Q96PR1 638 aa6.84□□□□□ -1.31
CCDC88A-212ENST00000474059 TLR6Q9Y2C9 796 aa6.84□□□□□ -1.31
CCDC88A-212ENST00000474059 IVNS1ABPQ9Y6Y0 642 aa6.84□□□□□ -1.31
CCDC88A-212ENST00000474059 EIF4BP23588 611 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-212ENST00000474059 ZNF605Q86T29 641 aa6.83□□□□□ -1.32
CCDC88A-212ENST00000474059 LILRA2Q8N149 483 aa6.83□□□□□ -1.32
CCDC88A-212ENST00000474059 FRMD6Q96NE9 622 aa6.83□□□□□ -1.32
CCDC88A-212ENST00000474059 SGPP1Q9BX95 441 aa6.83□□□□□ -1.32
CCDC88A-212ENST00000474059 TRIT1Q9H3H1 467 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-212ENST00000474059 ZNF552Q9H707 407 aaPredicted RBP6.83□□□□□ -1.32
CCDC88A-212ENST00000474059 PARD6AQ9NPB6 346 aa6.83□□□□□ -1.32
CCDC88A-212ENST00000474059 AK5Q9Y6K8 562 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms