RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 MBNL3Q9NUK0 354 aaKnown RBP9.62□□□□□ -0.87
CCDC39-202ENST00000471307 RNASE1P07998 156 aaKnown RBP9.61□□□□□ -0.87
CCDC39-202ENST00000471307 ZP2Q05996 745 aa9.61□□□□□ -0.87
CCDC39-202ENST00000471307 PPP1R13LQ8WUF5 828 aa9.61□□□□□ -0.87
CCDC39-202ENST00000471307 ZNF296Q8WUU4 475 aaPredicted RBP9.61□□□□□ -0.87
CCDC39-202ENST00000471307 RC3H2Q9HBD1 1191 aaKnown RBP9.61□□□□□ -0.87
CCDC39-202ENST00000471307 METTL5Q9NRN9 209 aaKnown RBP9.61□□□□□ -0.87
CCDC39-202ENST00000471307 GRIN3BO60391 1043 aa9.6□□□□□ -0.87
CCDC39-202ENST00000471307 TXKP42681 527 aa9.6□□□□□ -0.87
CCDC39-202ENST00000471307 LDLRAD1Q5T700 205 aa9.6□□□□□ -0.87
CCDC39-202ENST00000471307 CDKAL1Q5VV42 579 aa9.6□□□□□ -0.87
CCDC39-202ENST00000471307 FBXO27Q8NI29 283 aa9.6□□□□□ -0.87
CCDC39-202ENST00000471307 ADAMTS6Q9UKP5 1117 aa9.6□□□□□ -0.87
CCDC39-202ENST00000471307 RNF114Q9Y508 228 aa9.6□□□□□ -0.87
CCDC39-202ENST00000471307 ATE1O95260 518 aa9.59□□□□□ -0.87
CCDC39-202ENST00000471307 TNK2Q07912 1038 aa9.59□□□□□ -0.87
CCDC39-202ENST00000471307 UPK3BL1B0FP48 263 aa9.58□□□□□ -0.88
CCDC39-202ENST00000471307 UPK3BL2E5RIL1 263 aa9.58□□□□□ -0.88
CCDC39-202ENST00000471307 H3BS24 57 aa9.58□□□□□ -0.88
CCDC39-202ENST00000471307 VAMP1P23763 118 aa9.58□□□□□ -0.88
CCDC39-202ENST00000471307 ZNF76P36508 570 aa9.58□□□□□ -0.88
CCDC39-202ENST00000471307 LRRN4CLQ8ND94 238 aa9.58□□□□□ -0.88
CCDC39-202ENST00000471307 RNF141Q8WVD5 230 aa9.58□□□□□ -0.88
CCDC39-202ENST00000471307 CCDC74BQ96LY2 380 aa9.58□□□□□ -0.88
CCDC39-202ENST00000471307 BACH2Q9BYV9 841 aa9.58□□□□□ -0.88
CCDC39-202ENST00000471307 ATP13A1Q9HD20 1204 aa9.58□□□□□ -0.88
CCDC39-202ENST00000471307 ADAMTS1Q9UHI8 967 aa9.58□□□□□ -0.88
CCDC39-202ENST00000471307 PAPLNO95428 1278 aa9.57□□□□□ -0.88
CCDC39-202ENST00000471307 TMPRSS7Q7RTY8 843 aa9.57□□□□□ -0.88
CCDC39-202ENST00000471307 REXO1Q8N1G1 1221 aaKnown RBP9.57□□□□□ -0.88
CCDC39-202ENST00000471307 NT5C1AQ9BXI3 368 aa9.57□□□□□ -0.88
CCDC39-202ENST00000471307 TRIT1Q9H3H1 467 aaKnown RBP9.57□□□□□ -0.88
CCDC39-202ENST00000471307 KLHL3Q9UH77 587 aa9.57□□□□□ -0.88
CCDC39-202ENST00000471307 KCNH3Q9ULD8 1083 aa9.57□□□□□ -0.88
CCDC39-202ENST00000471307 TLR3O15455 904 aaKnown RBP9.56□□□□□ -0.88
CCDC39-202ENST00000471307 FLAD1Q8NFF5 587 aa9.56□□□□□ -0.88
CCDC39-202ENST00000471307 CCDC120Q96HB5 630 aa9.56□□□□□ -0.88
CCDC39-202ENST00000471307 Q96M66 194 aa9.56□□□□□ -0.88
CCDC39-202ENST00000471307 ASPNQ9BXN1 380 aa9.56□□□□□ -0.88
CCDC39-202ENST00000471307 EHMT1Q9H9B1 1298 aa9.56□□□□□ -0.88
CCDC39-202ENST00000471307 BRMS1Q9HCU9 246 aa9.56□□□□□ -0.88
CCDC39-202ENST00000471307 GMIPQ9P107 970 aa9.56□□□□□ -0.88
CCDC39-202ENST00000471307 PCDHB14Q9Y5E9 798 aa9.56□□□□□ -0.88
CCDC39-202ENST00000471307 CHURC1-FNTBB4DL54 471 aa9.55□□□□□ -0.88
CCDC39-202ENST00000471307 FANCCQ00597 558 aa9.55□□□□□ -0.88
CCDC39-202ENST00000471307 UBE2FQ969M7 185 aa9.55□□□□□ -0.88
CCDC39-202ENST00000471307 GPR62Q9BZJ7 368 aa9.55□□□□□ -0.88
CCDC39-202ENST00000471307 CARS2Q9HA77 564 aaKnown RBP9.55□□□□□ -0.88
CCDC39-202ENST00000471307 DNAJA2O60884 412 aa9.54□□□□□ -0.88
CCDC39-202ENST00000471307 CRKP46108 304 aa9.54□□□□□ -0.88
CCDC39-202ENST00000471307 TNNI2P48788 182 aa9.54□□□□□ -0.88
CCDC39-202ENST00000471307 APOBRQ0VD83 1088 aa9.54□□□□□ -0.88
CCDC39-202ENST00000471307 KIAA0825Q8IV33 1275 aa9.54□□□□□ -0.88
CCDC39-202ENST00000471307 PHACTR4Q8IZ21 702 aa9.54□□□□□ -0.88
CCDC39-202ENST00000471307 ZSWIM5Q9P217 1185 aa9.54□□□□□ -0.88
CCDC39-202ENST00000471307 SLC22A31A6NKX4 558 aa9.53□□□□□ -0.88
CCDC39-202ENST00000471307 RGS13O14921 159 aa9.53□□□□□ -0.88
CCDC39-202ENST00000471307 SLITRK4Q8IW52 837 aa9.53□□□□□ -0.88
CCDC39-202ENST00000471307 DTWD2Q8NBA8 298 aa9.53□□□□□ -0.88
CCDC39-202ENST00000471307 BAHD1Q8TBE0 780 aaPredicted RBP9.53□□□□□ -0.88
CCDC39-202ENST00000471307 KREMEN1Q96MU8 473 aa9.53□□□□□ -0.88
CCDC39-202ENST00000471307 SPON2Q9BUD6 331 aa9.53□□□□□ -0.88
CCDC39-202ENST00000471307 PRDM7Q9NQW5 492 aa9.53□□□□□ -0.88
CCDC39-202ENST00000471307 UBP1Q9NZI7 540 aa9.53□□□□□ -0.88
CCDC39-202ENST00000471307 SRFP11831 508 aa9.52□□□□□ -0.89
CCDC39-202ENST00000471307 ZNF165P49910 485 aa9.52□□□□□ -0.89
CCDC39-202ENST00000471307 CDCP2Q5VXM1 449 aa9.52□□□□□ -0.89
CCDC39-202ENST00000471307 KRTAP9-2Q9BYQ4 174 aa9.52□□□□□ -0.89
CCDC39-202ENST00000471307 DUSP15Q9H1R2 295 aaPredicted RBP9.52□□□□□ -0.89
CCDC39-202ENST00000471307 GPATCH2Q9NW75 528 aa9.52□□□□□ -0.89
CCDC39-202ENST00000471307 GBP1P32455 592 aa9.51□□□□□ -0.89
CCDC39-202ENST00000471307 TRIM26Q12899 539 aaPredicted RBP9.51□□□□□ -0.89
CCDC39-202ENST00000471307 LRRFIP1Q32MZ4 808 aaKnown RBP9.51□□□□□ -0.89
CCDC39-202ENST00000471307 SEZ6Q53EL9 994 aa9.51□□□□□ -0.89
CCDC39-202ENST00000471307 USP48Q86UV5 1035 aa9.51□□□□□ -0.89
CCDC39-202ENST00000471307 NKD1Q969G9 470 aa9.51□□□□□ -0.89
CCDC39-202ENST00000471307 RNF34Q969K3 372 aa9.51□□□□□ -0.89
CCDC39-202ENST00000471307 CTNND2Q9UQB3 1225 aa9.51□□□□□ -0.89
CCDC39-202ENST00000471307 SCAMP3O14828 347 aaKnown RBP9.5□□□□□ -0.89
CCDC39-202ENST00000471307 RECKO95980 971 aa9.5□□□□□ -0.89
CCDC39-202ENST00000471307 RAG1P15918 1043 aa9.5□□□□□ -0.89
CCDC39-202ENST00000471307 CCNFP41002 786 aa9.5□□□□□ -0.89
CCDC39-202ENST00000471307 CHMP4BP1P59074 171 aa9.5□□□□□ -0.89
CCDC39-202ENST00000471307 GAB4Q2WGN9 574 aa9.5□□□□□ -0.89
CCDC39-202ENST00000471307 ALPK1Q96QP1 1244 aa9.5□□□□□ -0.89
CCDC39-202ENST00000471307 KIF2CQ99661 725 aa9.5□□□□□ -0.89
CCDC39-202ENST00000471307 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.5□□□□□ -0.89
CCDC39-202ENST00000471307 TPP2P29144 1249 aaPredicted RBP9.49□□□□□ -0.89
CCDC39-202ENST00000471307 GDNFP39905 211 aa9.49□□□□□ -0.89
CCDC39-202ENST00000471307 AFMP43652 599 aa9.49□□□□□ -0.89
CCDC39-202ENST00000471307 RNF4P78317 190 aa9.49□□□□□ -0.89
CCDC39-202ENST00000471307 RAD51AP2Q09MP3 1159 aa9.49□□□□□ -0.89
CCDC39-202ENST00000471307 ARSHQ5FYA8 562 aa9.49□□□□□ -0.89
CCDC39-202ENST00000471307 FAM168AQ92567 244 aa9.49□□□□□ -0.89
CCDC39-202ENST00000471307 VWCEQ96DN2 955 aa9.49□□□□□ -0.89
CCDC39-202ENST00000471307 CNNM2Q9H8M5 875 aa9.49□□□□□ -0.89
CCDC39-202ENST00000471307 MEIS3P2A8K0S8 358 aa9.48□□□□□ -0.89
CCDC39-202ENST00000471307 ESR1P03372 595 aa9.48□□□□□ -0.89
CCDC39-202ENST00000471307 MCM4P33991 863 aa9.48□□□□□ -0.89
CCDC39-202ENST00000471307 OVOS1Q6IE37 1185 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms