RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PEX10O60683 326 aa20.03■□□□□ 0.8
CCDC28B-204ENST00000469003 FARP2O94887 1054 aaPredicted RBP20.03■□□□□ 0.8
CCDC28B-204ENST00000469003 HMGCRP04035 888 aa20.03■□□□□ 0.8
CCDC28B-204ENST00000469003 ADD2P35612 726 aa20.03■□□□□ 0.8
CCDC28B-204ENST00000469003 ERVK-9P63128 1117 aa20.03■□□□□ 0.8
CCDC28B-204ENST00000469003 ERVK-24P63145 666 aa20.03■□□□□ 0.8
CCDC28B-204ENST00000469003 ZYXQ15942 572 aaKnown RBP20.03■□□□□ 0.8
CCDC28B-204ENST00000469003 USP17L15C9J2P7 530 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 USP17L13C9JLJ4 530 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 USP17L11C9JVI0 530 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 USP17L18D6R9N7 530 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 USP17L22D6RA61 530 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 USP17L17D6RBQ6 530 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 USP17L19D6RCP7 530 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 USP17L20D6RJB6 530 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 MAPK4P31152 587 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 GUCY1A2P33402 732 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 USP17L24Q0WX57 530 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 ACER1Q8TDN7 264 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 DEFB118Q96PH6 123 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 HTATIP2Q9BUP3 242 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 ARMT1Q9H993 441 aa20.02■□□□□ 0.8
CCDC28B-204ENST00000469003 MBD4O95243 580 aa20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 EVX2Q03828 476 aa20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 Q3C1V9 767 aa20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 POTEEQ6S8J3 1075 aa20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 CHRDL2Q6WN34 429 aa20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 SOCS4Q8WXH5 440 aa20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 DPF3Q92784 378 aa20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 NUDT12Q9BQG2 462 aa20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 PAGR1Q9BTK6 254 aa20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 CRISPLD2Q9H0B8 497 aa20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 ATP8A2Q9NTI2 1148 aa20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 RABGAP1Q9Y3P9 1069 aa20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 RANBP2P49792 3224 aaKnown RBP20.01■□□□□ 0.79
CCDC28B-204ENST00000469003 SMARCA5O60264 1052 aaPredicted RBP20■□□□□ 0.79
CCDC28B-204ENST00000469003 TFRCP02786 760 aaKnown RBP20■□□□□ 0.79
CCDC28B-204ENST00000469003 VCAM1P19320 739 aa20■□□□□ 0.79
CCDC28B-204ENST00000469003 SEPT2Q15019 361 aa20■□□□□ 0.79
CCDC28B-204ENST00000469003 UBE3CQ15386 1083 aa20■□□□□ 0.79
CCDC28B-204ENST00000469003 SLFNL1Q499Z3 407 aa20■□□□□ 0.79
CCDC28B-204ENST00000469003 CATSPERGQ6ZRH7 1159 aa20■□□□□ 0.79
CCDC28B-204ENST00000469003 SWAP70Q9UH65 585 aa20■□□□□ 0.79
CCDC28B-204ENST00000469003 MYH8P13535 1937 aa20■□□□□ 0.79
CCDC28B-204ENST00000469003 BAZ2AQ9UIF9 1905 aaKnown RBP20■□□□□ 0.79
CCDC28B-204ENST00000469003 PRKAB2O43741 272 aa19.99■□□□□ 0.79
CCDC28B-204ENST00000469003 CYP2D6P10635 497 aa19.99■□□□□ 0.79
CCDC28B-204ENST00000469003 XRCC5P13010 732 aaKnown RBP19.99■□□□□ 0.79
CCDC28B-204ENST00000469003 CYP2B6P20813 491 aa19.99■□□□□ 0.79
CCDC28B-204ENST00000469003 CCAR1Q8IX12 1150 aaKnown RBP19.99■□□□□ 0.79
CCDC28B-204ENST00000469003 TRIB2Q92519 343 aa19.99■□□□□ 0.79
CCDC28B-204ENST00000469003 PORCNQ9H237 461 aa19.99■□□□□ 0.79
CCDC28B-204ENST00000469003 RPTORQ8N122 1335 aa19.99■□□□□ 0.79
CCDC28B-204ENST00000469003 MPHOSPH10O00566 681 aaKnown RBP19.98■□□□□ 0.79
CCDC28B-204ENST00000469003 CNMDO75829 334 aa19.98■□□□□ 0.79
CCDC28B-204ENST00000469003 TRIM32Q13049 653 aa19.98■□□□□ 0.79
CCDC28B-204ENST00000469003 ZSCAN25Q6NSZ9 544 aa19.98■□□□□ 0.79
CCDC28B-204ENST00000469003 LBX2Q6XYB7 198 aa19.98■□□□□ 0.79
CCDC28B-204ENST00000469003 GPR142Q7Z601 462 aa19.98■□□□□ 0.79
CCDC28B-204ENST00000469003 PLEKHH3Q7Z736 793 aa19.98■□□□□ 0.79
CCDC28B-204ENST00000469003 SLC44A5Q8NCS7 719 aa19.98■□□□□ 0.79
CCDC28B-204ENST00000469003 USP6NLQ92738 828 aa19.98■□□□□ 0.79
CCDC28B-204ENST00000469003 HMX1Q9NP08 348 aaPredicted RBP19.98■□□□□ 0.79
CCDC28B-204ENST00000469003 CHGBP05060 677 aa19.97■□□□□ 0.79
CCDC28B-204ENST00000469003 CCNA1P78396 465 aa19.97■□□□□ 0.79
CCDC28B-204ENST00000469003 MORN1Q5T089 497 aa19.97■□□□□ 0.79
CCDC28B-204ENST00000469003 TMEM179Q6ZVK1 233 aa19.97■□□□□ 0.79
CCDC28B-204ENST00000469003 TRMT44Q8IYL2 757 aaKnown RBP19.97■□□□□ 0.79
CCDC28B-204ENST00000469003 DYNLL2Q96FJ2 89 aa19.97■□□□□ 0.79
CCDC28B-204ENST00000469003 RPAP3Q9H6T3 665 aaPredicted RBP19.97■□□□□ 0.79
CCDC28B-204ENST00000469003 DCTPP1Q9H773 170 aa19.97■□□□□ 0.79
CCDC28B-204ENST00000469003 ECHDC1Q9NTX5 307 aa19.97■□□□□ 0.79
CCDC28B-204ENST00000469003 A0A1W2PRG0 241 aa19.96■□□□□ 0.79
CCDC28B-204ENST00000469003 RGS2P41220 211 aa19.96■□□□□ 0.79
CCDC28B-204ENST00000469003 MAP3K21Q5TCX8 1036 aa19.96■□□□□ 0.79
CCDC28B-204ENST00000469003 C12orf60Q5U649 245 aa19.96■□□□□ 0.79
CCDC28B-204ENST00000469003 AMOTL1Q8IY63 956 aa19.96■□□□□ 0.79
CCDC28B-204ENST00000469003 RBM27Q9P2N5 1060 aaKnown RBP19.96■□□□□ 0.79
CCDC28B-204ENST00000469003 SPDYE16A6NNV3 312 aaPredicted RBP19.95■□□□□ 0.78
CCDC28B-204ENST00000469003 ANKLE1Q8NAG6 615 aa19.95■□□□□ 0.78
CCDC28B-204ENST00000469003 DDRGK1Q96HY6 314 aa19.95■□□□□ 0.78
CCDC28B-204ENST00000469003 CWC22Q9HCG8 908 aaKnown RBP19.95■□□□□ 0.78
CCDC28B-204ENST00000469003 NR2E3Q9Y5X4 410 aa19.95■□□□□ 0.78
CCDC28B-204ENST00000469003 SLC4A4Q9Y6R1 1079 aa19.95■□□□□ 0.78
CCDC28B-204ENST00000469003 USP17L12C9JPN9 530 aa19.94■□□□□ 0.78
CCDC28B-204ENST00000469003 USP17L21D6R901 530 aa19.94■□□□□ 0.78
CCDC28B-204ENST00000469003 DLL1O00548 723 aa19.94■□□□□ 0.78
CCDC28B-204ENST00000469003 GLRX3O76003 335 aaKnown RBP19.94■□□□□ 0.78
CCDC28B-204ENST00000469003 PRKAR2AP13861 404 aaKnown RBP19.94■□□□□ 0.78
CCDC28B-204ENST00000469003 ZKSCAN1P17029 563 aaPredicted RBP19.94■□□□□ 0.78
CCDC28B-204ENST00000469003 GPATCH3Q96I76 525 aa19.94■□□□□ 0.78
CCDC28B-204ENST00000469003 CCDC17Q96LX7 622 aa19.94■□□□□ 0.78
CCDC28B-204ENST00000469003 APBA2Q99767 749 aa19.94■□□□□ 0.78
CCDC28B-204ENST00000469003 PUS7LQ9H0K6 701 aaKnown RBP19.94■□□□□ 0.78
CCDC28B-204ENST00000469003 BTBD7Q9P203 1132 aa19.94■□□□□ 0.78
CCDC28B-204ENST00000469003 CYP2D7A0A087X1C5 515 aa19.93■□□□□ 0.78
CCDC28B-204ENST00000469003 AKR1B1P15121 316 aa19.93■□□□□ 0.78
CCDC28B-204ENST00000469003 CDK8P49336 464 aa19.93■□□□□ 0.78
CCDC28B-204ENST00000469003 C16orf86Q6ZW13 317 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms