RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PAXBP1Q9Y5B6 917 aa10.25□□□□□ -0.77
SYNE1-217ENST00000466159 TRIM75PA6NK02 468 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 ACTN4O43707 911 aaKnown RBP10.24□□□□□ -0.77
SYNE1-217ENST00000466159 PCP11498 1178 aaKnown RBP10.24□□□□□ -0.77
SYNE1-217ENST00000466159 CFAP100Q494V2 611 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 E4F1Q66K89 784 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-217ENST00000466159 TMTC3Q6ZXV5 915 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 ELOA2Q8IYF1 753 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-217ENST00000466159 SRBD1Q8N5C6 995 aaKnown RBP10.24□□□□□ -0.77
SYNE1-217ENST00000466159 CCDC150Q8NCX0 1101 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 EPSTI1Q96J88 318 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 BCL11BQ9C0K0 894 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-217ENST00000466159 HOOK1Q9UJC3 728 aaKnown RBP10.24□□□□□ -0.77
SYNE1-217ENST00000466159 CCNL1Q9UK58 526 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-217ENST00000466159 RTCBQ9Y3I0 505 aaKnown RBP10.24□□□□□ -0.77
SYNE1-217ENST00000466159 A0A087X0B3 334 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 TMEM232C9JQI7 657 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 RGL2O15211 777 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 NPHP1O15259 732 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 ORC4O43929 436 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 CALM1P0DP23 149 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 CALM2P0DP24 149 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 CALM3P0DP25 149 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 VEGFAP15692 232 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-217ENST00000466159 SARSP49591 514 aaKnown RBP10.24□□□□□ -0.77
SYNE1-217ENST00000466159 NPY5RQ15761 445 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 CCDC112Q8NEF3 446 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 ATP8A2Q9NTI2 1148 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 DLEC1Q9Y238 1755 aa10.24□□□□□ -0.77
SYNE1-217ENST00000466159 PDS5AQ29RF7 1337 aaKnown RBP10.24□□□□□ -0.77
SYNE1-217ENST00000466159 BTAF1O14981 1849 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 DDAH1O94760 285 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 USP17L8P0C7I0 530 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 FMR1Q06787 632 aaKnown RBP eCLIP10.23□□□□□ -0.77
SYNE1-217ENST00000466159 NT5DC1Q5TFE4 455 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 SMARCE1Q969G3 411 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 CNTNAP5Q8WYK1 1306 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 GOLGA8FQ08AF8 430 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 GOLGA8DPQ0D2H9 430 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 NAA30Q147X3 362 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-217ENST00000466159 ZNF174Q15697 407 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 DZIP1Q86YF9 867 aaKnown RBP10.23□□□□□ -0.77
SYNE1-217ENST00000466159 TRMT44Q8IYL2 757 aaKnown RBP10.23□□□□□ -0.77
SYNE1-217ENST00000466159 CTCFLQ8NI51 663 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-217ENST00000466159 TNFRSF25Q93038 417 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 DHX58Q96C10 678 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 KCND1Q9NSA2 647 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 MCM9Q9NXL9 1143 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 CCDC88AQ3V6T2 1871 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 COL24A1Q17RW2 1714 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 IRS2Q9Y4H2 1338 aa10.23□□□□□ -0.77
SYNE1-217ENST00000466159 TSPY2A6NKD2 308 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 ADAMTS3O15072 1205 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 TOM1O60784 492 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 MORC3Q14149 939 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 ANKRD7Q92527 254 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 MED15Q96RN5 788 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 INTS13Q9NVM9 706 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 ANKIB1Q9P2G1 1089 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 ARPP21Q9UBL0 812 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-217ENST00000466159 CBFA2T2O43439 604 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 CASP1P29466 404 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 AFMP43652 599 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 NCBP1Q09161 790 aaKnown RBP10.22□□□□□ -0.77
SYNE1-217ENST00000466159 SBK1Q52WX2 424 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 RCSD1Q6JBY9 416 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 VSTM4Q8IW00 320 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 SYMPKQ92797 1274 aaKnown RBP10.22□□□□□ -0.77
SYNE1-217ENST00000466159 PPP1R13BQ96KQ4 1090 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 NFE2L3Q9Y4A8 694 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 LAMB1P07942 1786 aa10.22□□□□□ -0.77
SYNE1-217ENST00000466159 NFIXQ14938 502 aa10.21□□□□□ -0.77
SYNE1-217ENST00000466159 GRIK5Q16478 980 aa10.21□□□□□ -0.77
SYNE1-217ENST00000466159 MLKLQ8NB16 471 aa10.21□□□□□ -0.77
SYNE1-217ENST00000466159 SPATA20Q8TB22 786 aa10.21□□□□□ -0.77
SYNE1-217ENST00000466159 CERKQ8TCT0 537 aa10.21□□□□□ -0.77
SYNE1-217ENST00000466159 DYNLL2Q96FJ2 89 aa10.21□□□□□ -0.77
SYNE1-217ENST00000466159 GPR101Q96P66 508 aaPredicted RBP10.21□□□□□ -0.77
SYNE1-217ENST00000466159 BRMS1Q9HCU9 246 aa10.21□□□□□ -0.77
SYNE1-217ENST00000466159 KIAA1551Q9HCM1 1747 aa10.21□□□□□ -0.77
SYNE1-217ENST00000466159 TNRC6CQ9HCJ0 1690 aaKnown RBP10.21□□□□□ -0.77
SYNE1-217ENST00000466159 SCG2P13521 617 aa10.21□□□□□ -0.78
SYNE1-217ENST00000466159 RFC4P35249 363 aa10.21□□□□□ -0.78
SYNE1-217ENST00000466159 NLRP5P59047 1200 aa10.21□□□□□ -0.78
SYNE1-217ENST00000466159 PTGDRQ13258 359 aa10.21□□□□□ -0.78
SYNE1-217ENST00000466159 DIXDC1Q155Q3 683 aa10.21□□□□□ -0.78
SYNE1-217ENST00000466159 TTC38Q5R3I4 469 aa10.21□□□□□ -0.78
SYNE1-217ENST00000466159 KANK3Q6NY19 840 aa10.21□□□□□ -0.78
SYNE1-217ENST00000466159 PIK3AP1Q6ZUJ8 805 aa10.21□□□□□ -0.78
SYNE1-217ENST00000466159 VWA3AA6NCI4 1184 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 TOP1P11387 765 aaKnown RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 ZNF18P17022 549 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 CDK11BP21127 795 aaKnown RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 TFAP4Q01664 338 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 SPTY2D1Q68D10 685 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 PDCL2Q8N4E4 241 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 TRIML1Q8N9V2 468 aa10.2□□□□□ -0.78
SYNE1-217ENST00000466159 ENOX1Q8TC92 643 aaKnown RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 SH3RF3Q8TEJ3 882 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-217ENST00000466159 IL17RBQ9NRM6 502 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms