RNA–Protein interactions for RNA: ENST00000465877.1

COL5A1-206, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 3

Gene COL5A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-206ENST00000465877 PNMA3Q9UL41 463 aa15.42■□□□□ 0.06
COL5A1-206ENST00000465877 CCDC171Q6TFL3 1326 aa15.42■□□□□ 0.06
COL5A1-206ENST00000465877 AKR1B1P15121 316 aa15.41■□□□□ 0.06
COL5A1-206ENST00000465877 SEPT2Q15019 361 aa15.41■□□□□ 0.06
COL5A1-206ENST00000465877 VPS53Q5VIR6 699 aa15.41■□□□□ 0.06
COL5A1-206ENST00000465877 CLEC10AQ8IUN9 316 aa15.41■□□□□ 0.06
COL5A1-206ENST00000465877 TMOD4Q9NZQ9 345 aa15.41■□□□□ 0.06
COL5A1-206ENST00000465877 CPA4Q9UI42 421 aa15.41■□□□□ 0.06
COL5A1-206ENST00000465877 C19orf81C9J6K1 198 aa15.4■□□□□ 0.06
COL5A1-206ENST00000465877 SDSP20132 328 aa15.4■□□□□ 0.06
COL5A1-206ENST00000465877 CAP1Q01518 475 aa15.4■□□□□ 0.06
COL5A1-206ENST00000465877 ICA1Q05084 483 aa15.4■□□□□ 0.06
COL5A1-206ENST00000465877 PABPC4Q13310 644 aaKnown RBP eCLIP15.4■□□□□ 0.06
COL5A1-206ENST00000465877 ZYXQ15942 572 aaKnown RBP15.4■□□□□ 0.06
COL5A1-206ENST00000465877 MCMDC2Q4G0Z9 681 aa15.4■□□□□ 0.06
COL5A1-206ENST00000465877 C17orf99Q6UX52 265 aa15.4■□□□□ 0.06
COL5A1-206ENST00000465877 CENPQQ7L2Z9 268 aaPredicted RBP15.4■□□□□ 0.06
COL5A1-206ENST00000465877 STK11IPQ8N1F8 1099 aa15.4■□□□□ 0.06
COL5A1-206ENST00000465877 SMCR8Q8TEV9 937 aaPredicted RBP15.4■□□□□ 0.06
COL5A1-206ENST00000465877 DIAPH3Q9NSV4 1193 aa15.4■□□□□ 0.06
COL5A1-206ENST00000465877 PLXNB2O15031 1838 aa15.4■□□□□ 0.06
COL5A1-206ENST00000465877 ZMYM6O95789 1325 aa15.4■□□□□ 0.06
COL5A1-206ENST00000465877 PLIN4Q96Q06 1357 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 NEFLP07196 543 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 BCRP11274 1271 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 RASA1P20936 1047 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 USP14P54578 494 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 LACTBP83111 547 aaPredicted RBP15.39■□□□□ 0.05
COL5A1-206ENST00000465877 PPARAQ07869 468 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 IFFO2Q5TF58 517 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 USP17L2Q6R6M4 530 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 OTOP1Q7RTM1 612 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 ACER1Q8TDN7 264 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 ABHD8Q96I13 439 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 C12orf42Q96LP6 360 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 CCDC17Q96LX7 622 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 KIAA1683Q9H0B3 1180 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 TRIM17Q9Y577 477 aa15.39■□□□□ 0.05
COL5A1-206ENST00000465877 HIP1O00291 1037 aa15.38■□□□□ 0.05
COL5A1-206ENST00000465877 ASCC2Q9H1I8 757 aaPredicted RBP15.38■□□□□ 0.05
COL5A1-206ENST00000465877 EMILIN3Q9NT22 766 aa15.38■□□□□ 0.05
COL5A1-206ENST00000465877 CENPBP07199 599 aaPredicted RBP15.37■□□□□ 0.05
COL5A1-206ENST00000465877 VCAM1P19320 739 aa15.37■□□□□ 0.05
COL5A1-206ENST00000465877 OSBPP22059 807 aa15.37■□□□□ 0.05
COL5A1-206ENST00000465877 MFAP1P55081 439 aaKnown RBP15.37■□□□□ 0.05
COL5A1-206ENST00000465877 IRX3P78415 501 aaPredicted RBP15.37■□□□□ 0.05
COL5A1-206ENST00000465877 PKN2Q16513 984 aaKnown RBP15.37■□□□□ 0.05
COL5A1-206ENST00000465877 FBXO46Q6PJ61 603 aaPredicted RBP15.37■□□□□ 0.05
COL5A1-206ENST00000465877 CWC27Q6UX04 472 aaKnown RBP15.37■□□□□ 0.05
COL5A1-206ENST00000465877 ARHGAP39Q9C0H5 1083 aa15.37■□□□□ 0.05
COL5A1-206ENST00000465877 SH2D4AQ9H788 454 aa15.37■□□□□ 0.05
COL5A1-206ENST00000465877 EFCC1Q9HA90 598 aa15.37■□□□□ 0.05
COL5A1-206ENST00000465877 MKNK2Q9HBH9 465 aa15.37■□□□□ 0.05
COL5A1-206ENST00000465877 ZNF287Q9HBT7 754 aa15.37■□□□□ 0.05
COL5A1-206ENST00000465877 ARHGEF10LQ9HCE6 1279 aa15.37■□□□□ 0.05
COL5A1-206ENST00000465877 DOCK3Q8IZD9 2030 aa15.37■□□□□ 0.05
COL5A1-206ENST00000465877 A0A1W2PRG0 241 aa15.36■□□□□ 0.05
COL5A1-206ENST00000465877 PRDM1O75626 825 aa15.36■□□□□ 0.05
COL5A1-206ENST00000465877 SLC3A2P08195 630 aaKnown RBP15.36■□□□□ 0.05
COL5A1-206ENST00000465877 HSPD1P10809 573 aaKnown RBP15.36■□□□□ 0.05
COL5A1-206ENST00000465877 HOXA7P31268 230 aaPredicted RBP15.36■□□□□ 0.05
COL5A1-206ENST00000465877 PDE4BQ07343 736 aa15.36■□□□□ 0.05
COL5A1-206ENST00000465877 KIF22Q14807 665 aa15.36■□□□□ 0.05
COL5A1-206ENST00000465877 RAD50Q92878 1312 aa15.36■□□□□ 0.05
COL5A1-206ENST00000465877 ZNF236Q9UL36 1845 aa15.36■□□□□ 0.05
COL5A1-206ENST00000465877 CAPN15O75808 1086 aa15.35■□□□□ 0.05
COL5A1-206ENST00000465877 ECM2O94769 699 aaPredicted RBP15.35■□□□□ 0.05
COL5A1-206ENST00000465877 CTGFP29279 349 aa15.35■□□□□ 0.05
COL5A1-206ENST00000465877 GCLCP48506 637 aaPredicted RBP15.35■□□□□ 0.05
COL5A1-206ENST00000465877 ALX1Q15699 326 aa15.35■□□□□ 0.05
COL5A1-206ENST00000465877 FAM110CQ1W6H9 321 aa15.35■□□□□ 0.05
COL5A1-206ENST00000465877 CCDC136Q96JN2 1154 aa15.35■□□□□ 0.05
COL5A1-206ENST00000465877 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.35■□□□□ 0.05
COL5A1-206ENST00000465877 HERVK_113P62684 666 aa15.34■□□□□ 0.05
COL5A1-206ENST00000465877 ATP2B2Q01814 1243 aa15.34■□□□□ 0.05
COL5A1-206ENST00000465877 CTDSPL2Q05D32 466 aa15.34■□□□□ 0.05
COL5A1-206ENST00000465877 ARHGEF6Q15052 776 aa15.34■□□□□ 0.05
COL5A1-206ENST00000465877 ANKRD13CQ8N6S4 541 aa15.34■□□□□ 0.05
COL5A1-206ENST00000465877 TRIM47Q96LD4 638 aa15.34■□□□□ 0.05
COL5A1-206ENST00000465877 IL25Q9H293 177 aa15.34■□□□□ 0.05
COL5A1-206ENST00000465877 KANSL2Q9H9L4 492 aa15.34■□□□□ 0.05
COL5A1-206ENST00000465877 ANAPC4Q9UJX5 808 aa15.34■□□□□ 0.05
COL5A1-206ENST00000465877 HPS5Q9UPZ3 1129 aa15.34■□□□□ 0.05
COL5A1-206ENST00000465877 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.34■□□□□ 0.05
COL5A1-206ENST00000465877 TMX2Q9Y320 296 aa15.34■□□□□ 0.05
COL5A1-206ENST00000465877 USP17L15C9J2P7 530 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 USP17L13C9JLJ4 530 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 USP17L11C9JVI0 530 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 USP17L18D6R9N7 530 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 USP17L22D6RA61 530 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 USP17L17D6RBQ6 530 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 USP17L19D6RCP7 530 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 USP17L20D6RJB6 530 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 FGAP02671 866 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 EEF2P13639 858 aaKnown RBP15.33■□□□□ 0.04
COL5A1-206ENST00000465877 PSMC4P43686 418 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 USP17L24Q0WX57 530 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 SKAP1Q86WV1 359 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 SIAH1Q8IUQ4 282 aa15.33■□□□□ 0.04
COL5A1-206ENST00000465877 ZNF444Q8N0Y2 327 aaPredicted RBP15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms