RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CTDSPL2Q05D32 466 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 KCTD19Q17RG1 926 aaPredicted RBP13.23□□□□□ -0.29
CPSF3-202ENST00000460593 TMEM67Q5HYA8 995 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 WDR93Q6P2C0 686 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 FAM76AQ8TAV0 307 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 CAGE1Q8TC20 777 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 GNL3LQ9NVN8 582 aaKnown RBP13.23□□□□□ -0.29
CPSF3-202ENST00000460593 CPDO75976 1380 aa13.23□□□□□ -0.29
CPSF3-202ENST00000460593 EYA2O00167 538 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 MYCNP04198 464 aaPredicted RBP13.22□□□□□ -0.29
CPSF3-202ENST00000460593 SLC7A5Q01650 507 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 CUL4BQ13620 913 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 NT5DC1Q5TFE4 455 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 CXorf56Q9H5V9 222 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 ATP1A2P50993 1020 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 EARS2Q5JPH6 523 aaKnown RBP13.22□□□□□ -0.29
CPSF3-202ENST00000460593 CNGA4Q8IV77 575 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 FBXL16Q8N461 479 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 NAA15Q9BXJ9 866 aaKnown RBP13.22□□□□□ -0.29
CPSF3-202ENST00000460593 ZNF330Q9Y3S2 320 aaPredicted RBP13.22□□□□□ -0.29
CPSF3-202ENST00000460593 EBAG9O00559 213 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 AARSP49588 968 aaKnown RBP eCLIP13.22□□□□□ -0.29
CPSF3-202ENST00000460593 EIF5P55010 431 aaKnown RBP13.22□□□□□ -0.29
CPSF3-202ENST00000460593 FILIP1LQ4L180 1135 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 KCTD16Q68DU8 428 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 CPLX2Q6PUV4 134 aaKnown RBP13.22□□□□□ -0.29
CPSF3-202ENST00000460593 SND1Q7KZF4 910 aaKnown RBP eCLIP13.22□□□□□ -0.29
CPSF3-202ENST00000460593 TRAPPC11Q7Z392 1133 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 SH2D3CQ8N5H7 860 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 EHD2Q9NZN4 543 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 VPS54Q9P1Q0 977 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 PHF8Q9UPP1 1060 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 TACC3Q9Y6A5 838 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 CAPN7Q9Y6W3 813 aa13.22□□□□□ -0.29
CPSF3-202ENST00000460593 RCCD1A6NED2 376 aa13.21□□□□□ -0.29
CPSF3-202ENST00000460593 PPP1R3GB7ZBB8 358 aa13.21□□□□□ -0.29
CPSF3-202ENST00000460593 CPP00450 1065 aa13.21□□□□□ -0.29
CPSF3-202ENST00000460593 IL15P40933 162 aaPredicted RBP13.21□□□□□ -0.29
CPSF3-202ENST00000460593 SSRP1Q08945 709 aaKnown RBP13.21□□□□□ -0.29
CPSF3-202ENST00000460593 CDKAL1Q5VV42 579 aa13.21□□□□□ -0.29
CPSF3-202ENST00000460593 CYB5RLQ6IPT4 315 aa13.21□□□□□ -0.29
CPSF3-202ENST00000460593 SUGP1Q8IWZ8 645 aaKnown RBP13.21□□□□□ -0.29
CPSF3-202ENST00000460593 SMCR8Q8TEV9 937 aaPredicted RBP13.21□□□□□ -0.29
CPSF3-202ENST00000460593 IDH1O75874 414 aaKnown RBP13.21□□□□□ -0.3
CPSF3-202ENST00000460593 PSEN1P49768 467 aa13.21□□□□□ -0.3
CPSF3-202ENST00000460593 PDCLQ13371 301 aa13.21□□□□□ -0.3
CPSF3-202ENST00000460593 CCDC122Q5T0U0 273 aa13.21□□□□□ -0.3
CPSF3-202ENST00000460593 APPBP2Q92624 585 aa13.21□□□□□ -0.3
CPSF3-202ENST00000460593 AIDAQ96BJ3 306 aa13.21□□□□□ -0.3
CPSF3-202ENST00000460593 ARL8AQ96BM9 186 aa13.21□□□□□ -0.3
CPSF3-202ENST00000460593 PAGE5Q96GU1 130 aa13.21□□□□□ -0.3
CPSF3-202ENST00000460593 JPH2Q9BR39 696 aaPredicted RBP13.21□□□□□ -0.3
CPSF3-202ENST00000460593 EPN1Q9Y6I3 576 aaPredicted RBP13.21□□□□□ -0.3
CPSF3-202ENST00000460593 MARF1Q9Y4F3 1742 aaKnown RBP13.21□□□□□ -0.3
CPSF3-202ENST00000460593 MACROD2A1Z1Q3 448 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 GOLGA6BA6NDN3 693 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 CDKL5O76039 1030 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 ATP2B2Q01814 1243 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 ESCO1Q5FWF5 840 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 TMTC1Q8IUR5 882 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 NUP133Q8WUM0 1156 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 LACRTQ9GZZ8 138 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 LY9Q9HBG7 655 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 CEP126Q9P2H0 1117 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 SAR1BQ9Y6B6 198 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 IFIT3O14879 490 aaKnown RBP13.2□□□□□ -0.3
CPSF3-202ENST00000460593 PRDM1O75626 825 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 NDUFA10O95299 355 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 MMP1P03956 469 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 ERCC5P28715 1186 aaPredicted RBP13.2□□□□□ -0.3
CPSF3-202ENST00000460593 MAP2K2P36507 400 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 TDO2P48775 406 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 HERVK_113P62684 666 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 CYP27A1Q02318 531 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 CYP26C1Q6V0L0 522 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 OSCARQ8IYS5 282 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 IGDCC4Q8TDY8 1250 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 SYMPKQ92797 1274 aaKnown RBP13.2□□□□□ -0.3
CPSF3-202ENST00000460593 CAPS2Q9BXY5 557 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 CD248Q9HCU0 757 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 GRIN2DO15399 1336 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 INPP5BP32019 993 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 RRAGBQ5VZM2 374 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 CCDC91Q7Z6B0 441 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 MSL3Q8N5Y2 521 aaKnown RBP13.2□□□□□ -0.3
CPSF3-202ENST00000460593 CTCFLQ8NI51 663 aaPredicted RBP13.2□□□□□ -0.3
CPSF3-202ENST00000460593 JAKMIP2Q96AA8 810 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 SLC52A2Q9HAB3 445 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 SLC12A7Q9Y666 1083 aa13.2□□□□□ -0.3
CPSF3-202ENST00000460593 LTN1O94822 1766 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 TTC26A0AVF1 554 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 TRIM49BA6NDI0 452 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 ZEB2O60315 1214 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 ZC3H6P61129 1189 aaKnown RBP13.19□□□□□ -0.3
CPSF3-202ENST00000460593 UBXN1Q04323 297 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 MAP9Q49MG5 647 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 ANKRD20A12PQ8NF67 263 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 JADE2Q9NQC1 790 aa13.19□□□□□ -0.3
CPSF3-202ENST00000460593 DMGDHQ9UI17 866 aaKnown RBP13.19□□□□□ -0.3
CPSF3-202ENST00000460593 EID1Q9Y6B2 187 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms