RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 GOLGA6CA6NDK9 693 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 FGAP02671 866 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 GOLGA6DP0CG33 693 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 SSRP1Q08945 709 aaKnown RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 APOBRQ0VD83 1088 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 WTAPQ15007 396 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 CCDC38Q502W7 563 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 TBC1D9BQ66K14 1250 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 MCTP2Q6DN12 878 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 GPT2Q8TD30 523 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 ARHGEF1Q92888 912 aaKnown RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 OSBP2Q969R2 916 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 RPGRIP1Q96KN7 1286 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 LRRC2Q9BYS8 371 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 JADE2Q9NQC1 790 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 GOLGA6AQ9NYA3 693 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 M0R2C6 588 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 KRT86O43790 486 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 PFKFB2O60825 505 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 TACC1O75410 805 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 TRIM37O94972 964 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 LDHBP07195 334 aaKnown RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 ATP2B1P20020 1258 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 ATP2B4P23634 1241 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 LACTBP83111 547 aaPredicted RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 HLTFQ14527 1009 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 SLC10A5Q5PT55 438 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 CATIPQ7Z7H3 387 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 FCHSD1Q86WN1 690 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 NEK11Q8NG66 645 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 IFT74Q96LB3 600 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 BCCIPQ9P287 314 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 GGA1Q9UJY5 639 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 TPCN1Q9ULQ1 816 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 ANGEL1Q9UNK9 670 aaKnown RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 MORC2Q9Y6X9 1032 aaPredicted RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 ARFGEF2Q9Y6D5 1785 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 ABCA3Q99758 1704 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 BIN1O00499 593 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 PPFIA3O75145 1194 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 PCP11498 1178 aaKnown RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 IARSP41252 1262 aaKnown RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 MAGEA9P43362 315 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 VAV2P52735 878 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 FAM160A1Q05DH4 1040 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 SPECC1Q5M775 1068 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 CNGA4Q8IV77 575 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 NUP133Q8WUM0 1156 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 NAPGQ99747 312 aaPredicted RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 SWAP70Q9UH65 585 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 SRP68Q9UHB9 627 aaKnown RBP6.97□□□□□ -1.29
VPS13D-202ENST00000460333 ZNF804BA4D1E1 1349 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 AK9Q5TCS8 1911 aa6.97□□□□□ -1.29
VPS13D-202ENST00000460333 TMCO5BA8MYB1 307 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 NEBLO76041 1014 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 CALM1P0DP23 149 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 CALM2P0DP24 149 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 CALM3P0DP25 149 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 TRIM14Q14142 442 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 PPP2R5BQ15173 497 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 VPS36Q86VN1 386 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 CCDC155Q8N6L0 562 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 FBF1Q8TES7 1133 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 DDX12PQ92771 950 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 EYA3Q99504 573 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 ARMT1Q9H993 441 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 WWC3Q9ULE0 1092 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 NSFL1CQ9UNZ2 370 aaKnown RBP6.96□□□□□ -1.29
VPS13D-202ENST00000460333 XDHP47989 1333 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 WDR19Q8NEZ3 1342 aa6.96□□□□□ -1.29
VPS13D-202ENST00000460333 PTPDC1A2A3K4 754 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 H0YIN7 160 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 RANBP6O60518 1105 aaKnown RBP6.96□□□□□ -1.3
VPS13D-202ENST00000460333 BBOX1O75936 387 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 POLR3DP05423 398 aaPredicted RBP6.96□□□□□ -1.3
VPS13D-202ENST00000460333 NT5C2P49902 561 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 MYL5Q02045 173 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 RBBP5Q15291 538 aaKnown RBP6.96□□□□□ -1.3
VPS13D-202ENST00000460333 ZNF569Q5MCW4 686 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 CPLX3Q8WVH0 158 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 TSGA10Q9BZW7 698 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 TANGO6Q9C0B7 1094 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 SPTLC3Q9NUV7 552 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 RMND1Q9NWS8 449 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 MPHOSPH10O00566 681 aaKnown RBP6.96□□□□□ -1.3
VPS13D-202ENST00000460333 GRAPQ13588 217 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 RASGRF1Q13972 1273 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 FAM182BQ5T319 152 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 IFNL3Q8IZI9 196 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 GRAPLQ8TC17 118 aaPredicted RBP6.96□□□□□ -1.3
VPS13D-202ENST00000460333 TBC1D22AQ8WUA7 517 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 MKNK2Q9HBH9 465 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 VEZTQ9HBM0 779 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 SPATS2LQ9NUQ6 558 aaKnown RBP6.96□□□□□ -1.3
VPS13D-202ENST00000460333 BMP15O95972 392 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 CYP2E1P05181 493 aaPredicted RBP6.96□□□□□ -1.3
VPS13D-202ENST00000460333 ALDH1B1P30837 517 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 DDIT3P35638 169 aa6.96□□□□□ -1.3
VPS13D-202ENST00000460333 GYG1P46976 350 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 201.7 ms