RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 SH3D19Q5HYK7 790 aa22.25■■□□□ 1.15
HOXD3-204ENST00000459979 PROCA1Q8NCQ7 364 aaPredicted RBP22.25■■□□□ 1.15
HOXD3-204ENST00000459979 STRBPQ96SI9 672 aaKnown RBP22.25■■□□□ 1.15
HOXD3-204ENST00000459979 ZBTB21Q9ULJ3 1066 aa22.25■■□□□ 1.15
HOXD3-204ENST00000459979 BAZ2AQ9UIF9 1905 aaKnown RBP22.25■■□□□ 1.15
HOXD3-204ENST00000459979 SHMT1P34896 483 aa22.24■■□□□ 1.15
HOXD3-204ENST00000459979 HMGCS2P54868 508 aa22.24■■□□□ 1.15
HOXD3-204ENST00000459979 NUCB1Q02818 461 aa22.24■■□□□ 1.15
HOXD3-204ENST00000459979 TICAM2Q86XR7 235 aa22.24■■□□□ 1.15
HOXD3-204ENST00000459979 OSBP2Q969R2 916 aa22.24■■□□□ 1.15
HOXD3-204ENST00000459979 RBM27Q9P2N5 1060 aaKnown RBP22.24■■□□□ 1.15
HOXD3-204ENST00000459979 SLC4A4Q9Y6R1 1079 aa22.24■■□□□ 1.15
HOXD3-204ENST00000459979 GDF11O95390 407 aa22.23■■□□□ 1.15
HOXD3-204ENST00000459979 SGPL1O95470 568 aa22.23■■□□□ 1.15
HOXD3-204ENST00000459979 GIMAP6Q6P9H5 292 aa22.23■■□□□ 1.15
HOXD3-204ENST00000459979 CHD1LQ86WJ1 897 aa22.23■■□□□ 1.15
HOXD3-204ENST00000459979 HTATIP2Q9BUP3 242 aa22.23■■□□□ 1.15
HOXD3-204ENST00000459979 LNPKQ9C0E8 428 aa22.23■■□□□ 1.15
HOXD3-204ENST00000459979 PLXNB2O15031 1838 aa22.22■■□□□ 1.15
HOXD3-204ENST00000459979 BACE1P56817 501 aa22.22■■□□□ 1.15
HOXD3-204ENST00000459979 IRF5Q13568 498 aa22.22■■□□□ 1.15
HOXD3-204ENST00000459979 CERKLQ49MI3 558 aaPredicted RBP22.22■■□□□ 1.15
HOXD3-204ENST00000459979 C12orf60Q5U649 245 aa22.22■■□□□ 1.15
HOXD3-204ENST00000459979 PXYLP1Q8TE99 480 aa22.22■■□□□ 1.15
HOXD3-204ENST00000459979 COA7Q96BR5 231 aa22.22■■□□□ 1.15
HOXD3-204ENST00000459979 DDRGK1Q96HY6 314 aa22.22■■□□□ 1.15
HOXD3-204ENST00000459979 DEFB118Q96PH6 123 aa22.22■■□□□ 1.15
HOXD3-204ENST00000459979 SWAP70Q9UH65 585 aa22.22■■□□□ 1.15
HOXD3-204ENST00000459979 PNMA3Q9UL41 463 aa22.22■■□□□ 1.15
HOXD3-204ENST00000459979 C19orf81C9J6K1 198 aa22.21■■□□□ 1.15
HOXD3-204ENST00000459979 GH2P01242 217 aa22.21■■□□□ 1.15
HOXD3-204ENST00000459979 FAM110CQ1W6H9 321 aa22.21■■□□□ 1.15
HOXD3-204ENST00000459979 SHROOM1Q2M3G4 852 aaPredicted RBP22.21■■□□□ 1.15
HOXD3-204ENST00000459979 B4GALNT3Q6L9W6 998 aa22.21■■□□□ 1.15
HOXD3-204ENST00000459979 EVI5LQ96CN4 794 aa22.21■■□□□ 1.15
HOXD3-204ENST00000459979 FSD1Q9BTV5 496 aa22.21■■□□□ 1.15
HOXD3-204ENST00000459979 OSBPL3Q9H4L5 887 aa22.21■■□□□ 1.15
HOXD3-204ENST00000459979 GSG1L2A8MUP6 293 aa22.2■■□□□ 1.14
HOXD3-204ENST00000459979 USP17L12C9JPN9 530 aa22.2■■□□□ 1.14
HOXD3-204ENST00000459979 USP17L21D6R901 530 aa22.2■■□□□ 1.14
HOXD3-204ENST00000459979 TFRCP02786 760 aaKnown RBP22.2■■□□□ 1.14
HOXD3-204ENST00000459979 CYP2D6P10635 497 aa22.2■■□□□ 1.14
HOXD3-204ENST00000459979 GNAT2P19087 354 aa22.2■■□□□ 1.14
HOXD3-204ENST00000459979 EVX2Q03828 476 aa22.2■■□□□ 1.14
HOXD3-204ENST00000459979 ABCB5Q2M3G0 1257 aa22.2■■□□□ 1.14
HOXD3-204ENST00000459979 ZMYM1Q5SVZ6 1142 aa22.2■■□□□ 1.14
HOXD3-204ENST00000459979 USP17L10C9JJH3 530 aa22.19■■□□□ 1.14
HOXD3-204ENST00000459979 GPAA1O43292 621 aa22.19■■□□□ 1.14
HOXD3-204ENST00000459979 SBK1Q52WX2 424 aa22.19■■□□□ 1.14
HOXD3-204ENST00000459979 AMOTL1Q8IY63 956 aa22.19■■□□□ 1.14
HOXD3-204ENST00000459979 ASCC2Q9H1I8 757 aaPredicted RBP22.19■■□□□ 1.14
HOXD3-204ENST00000459979 CABP5Q9NP86 173 aa22.19■■□□□ 1.14
HOXD3-204ENST00000459979 M0R2C6 588 aa22.18■■□□□ 1.14
HOXD3-204ENST00000459979 PEX10O60683 326 aa22.18■■□□□ 1.14
HOXD3-204ENST00000459979 PABPC4Q13310 644 aaKnown RBP eCLIP22.18■■□□□ 1.14
HOXD3-204ENST00000459979 MTMR2Q13614 643 aa22.18■■□□□ 1.14
HOXD3-204ENST00000459979 CTR9Q6PD62 1173 aa22.18■■□□□ 1.14
HOXD3-204ENST00000459979 PAK6Q9NQU5 681 aaPredicted RBP22.18■■□□□ 1.14
HOXD3-204ENST00000459979 ARPP21Q9UBL0 812 aaPredicted RBP22.18■■□□□ 1.14
HOXD3-204ENST00000459979 MYH8P13535 1937 aa22.18■■□□□ 1.14
HOXD3-204ENST00000459979 IRX6P78412 446 aaPredicted RBP22.17■■□□□ 1.14
HOXD3-204ENST00000459979 PLEKHM2Q8IWE5 1019 aa22.17■■□□□ 1.14
HOXD3-204ENST00000459979 NR2E3Q9Y5X4 410 aa22.17■■□□□ 1.14
HOXD3-204ENST00000459979 PATL2C9JE40 543 aaKnown RBP22.16■■□□□ 1.14
HOXD3-204ENST00000459979 HOXA7P31268 230 aaPredicted RBP22.16■■□□□ 1.14
HOXD3-204ENST00000459979 GUCY1A2P33402 732 aa22.16■■□□□ 1.14
HOXD3-204ENST00000459979 GCLCP48506 637 aaPredicted RBP22.16■■□□□ 1.14
HOXD3-204ENST00000459979 TRIM32Q13049 653 aa22.16■■□□□ 1.14
HOXD3-204ENST00000459979 C16orf86Q6ZW13 317 aa22.16■■□□□ 1.14
HOXD3-204ENST00000459979 DIS3LQ8TF46 1054 aaKnown RBP22.16■■□□□ 1.14
HOXD3-204ENST00000459979 DYNLL2Q96FJ2 89 aa22.16■■□□□ 1.14
HOXD3-204ENST00000459979 C12orf42Q96LP6 360 aa22.16■■□□□ 1.14
HOXD3-204ENST00000459979 CCDC17Q96LX7 622 aa22.16■■□□□ 1.14
HOXD3-204ENST00000459979 SEC62Q99442 399 aaKnown RBP22.16■■□□□ 1.14
HOXD3-204ENST00000459979 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.16■■□□□ 1.14
HOXD3-204ENST00000459979 TMOD4Q9NZQ9 345 aa22.16■■□□□ 1.14
HOXD3-204ENST00000459979 CYP2D7A0A087X1C5 515 aa22.15■■□□□ 1.14
HOXD3-204ENST00000459979 CDK8P49336 464 aa22.15■■□□□ 1.14
HOXD3-204ENST00000459979 SLC44A5Q8NCS7 719 aa22.15■■□□□ 1.14
HOXD3-204ENST00000459979 PAWRQ96IZ0 340 aaKnown RBP22.15■■□□□ 1.14
HOXD3-204ENST00000459979 KIAA1683Q9H0B3 1180 aa22.15■■□□□ 1.14
HOXD3-204ENST00000459979 CRISPLD2Q9H0B8 497 aa22.15■■□□□ 1.14
HOXD3-204ENST00000459979 PRO3102Q9H379 93 aa22.15■■□□□ 1.14
HOXD3-204ENST00000459979 SMIM22K7EJ46 135 aa22.14■■□□□ 1.13
HOXD3-204ENST00000459979 EVI5O60447 810 aa22.14■■□□□ 1.13
HOXD3-204ENST00000459979 RAB3GAP1Q15042 981 aa22.14■■□□□ 1.13
HOXD3-204ENST00000459979 USP17L2Q6R6M4 530 aa22.14■■□□□ 1.13
HOXD3-204ENST00000459979 TMEM179Q6ZVK1 233 aa22.14■■□□□ 1.13
HOXD3-204ENST00000459979 EPB41L4AQ9HCS5 686 aaPredicted RBP22.14■■□□□ 1.13
HOXD3-204ENST00000459979 EMILIN3Q9NT22 766 aa22.14■■□□□ 1.13
HOXD3-204ENST00000459979 GJD2Q9UKL4 321 aa22.14■■□□□ 1.13
HOXD3-204ENST00000459979 ROBO3Q96MS0 1386 aa22.13■■□□□ 1.13
HOXD3-204ENST00000459979 USP14P54578 494 aa22.13■■□□□ 1.13
HOXD3-204ENST00000459979 IRX3P78415 501 aaPredicted RBP22.13■■□□□ 1.13
HOXD3-204ENST00000459979 SEPT2Q15019 361 aa22.13■■□□□ 1.13
HOXD3-204ENST00000459979 IFNL3Q8IZI9 196 aa22.13■■□□□ 1.13
HOXD3-204ENST00000459979 HMGCRP04035 888 aa22.12■■□□□ 1.13
HOXD3-204ENST00000459979 P2RX7Q99572 595 aaKnown RBP22.12■■□□□ 1.13
HOXD3-204ENST00000459979 NACAP1Q9BZK3 213 aa22.12■■□□□ 1.13
HOXD3-204ENST00000459979 TXNRD2Q9NNW7 524 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms