RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 NFXL1Q6ZNB6 911 aa22.57■■□□□ 1.2
RPS28-202ENST00000449223 ZNF654Q8IZM8 581 aa22.57■■□□□ 1.2
RPS28-202ENST00000449223 MAP3K14Q99558 947 aa22.57■■□□□ 1.2
RPS28-202ENST00000449223 PAPPA2Q9BXP8 1791 aa22.56■■□□□ 1.2
RPS28-202ENST00000449223 ZBTB43O43298 467 aa22.56■■□□□ 1.2
RPS28-202ENST00000449223 DDAH1O94760 285 aa22.56■■□□□ 1.2
RPS28-202ENST00000449223 SCRN1Q12765 414 aa22.56■■□□□ 1.2
RPS28-202ENST00000449223 MIGA2Q7L4E1 593 aa22.56■■□□□ 1.2
RPS28-202ENST00000449223 KRT26Q7Z3Y9 468 aa22.56■■□□□ 1.2
RPS28-202ENST00000449223 KANSL2Q9H9L4 492 aa22.56■■□□□ 1.2
RPS28-202ENST00000449223 ZNF112Q9UJU3 913 aa22.56■■□□□ 1.2
RPS28-202ENST00000449223 CALM1P0DP23 149 aa22.55■■□□□ 1.2
RPS28-202ENST00000449223 CALM2P0DP24 149 aa22.55■■□□□ 1.2
RPS28-202ENST00000449223 CALM3P0DP25 149 aa22.55■■□□□ 1.2
RPS28-202ENST00000449223 GUCY1A2P33402 732 aa22.55■■□□□ 1.2
RPS28-202ENST00000449223 CAP2P40123 477 aa22.55■■□□□ 1.2
RPS28-202ENST00000449223 SYNE3Q6ZMZ3 975 aa22.55■■□□□ 1.2
RPS28-202ENST00000449223 CATIPQ7Z7H3 387 aa22.55■■□□□ 1.2
RPS28-202ENST00000449223 SYNPO2Q9UMS6 1093 aa22.55■■□□□ 1.2
RPS28-202ENST00000449223 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.55■■□□□ 1.2
RPS28-202ENST00000449223 DOCK1Q14185 1865 aa22.54■■□□□ 1.2
RPS28-202ENST00000449223 TTLL1O95922 423 aa22.54■■□□□ 1.2
RPS28-202ENST00000449223 TOP1P11387 765 aaKnown RBP22.54■■□□□ 1.2
RPS28-202ENST00000449223 CCDC83Q8IWF9 413 aa22.54■■□□□ 1.2
RPS28-202ENST00000449223 NECAB1Q8N987 351 aa22.54■■□□□ 1.2
RPS28-202ENST00000449223 MKL1Q969V6 931 aa22.54■■□□□ 1.2
RPS28-202ENST00000449223 TMEM47Q9BQJ4 181 aa22.54■■□□□ 1.2
RPS28-202ENST00000449223 LLPHQ9BRT6 129 aaKnown RBP22.54■■□□□ 1.2
RPS28-202ENST00000449223 CABP5Q9NP86 173 aa22.54■■□□□ 1.2
RPS28-202ENST00000449223 NYAP2Q9P242 653 aa22.54■■□□□ 1.2
RPS28-202ENST00000449223 STX8Q9UNK0 236 aa22.54■■□□□ 1.2
RPS28-202ENST00000449223 DHX16O60231 1041 aaKnown RBP22.53■■□□□ 1.2
RPS28-202ENST00000449223 CTNND1O60716 968 aaKnown RBP22.53■■□□□ 1.2
RPS28-202ENST00000449223 GDF11O95390 407 aa22.53■■□□□ 1.2
RPS28-202ENST00000449223 GH2P01242 217 aa22.53■■□□□ 1.2
RPS28-202ENST00000449223 HSP90AA1P07900 732 aaKnown RBP22.53■■□□□ 1.2
RPS28-202ENST00000449223 DDIT3P35638 169 aa22.53■■□□□ 1.2
RPS28-202ENST00000449223 METAP2P50579 478 aaKnown RBP eCLIP22.53■■□□□ 1.22e-7■□□□□ 11
RPS28-202ENST00000449223 JAG1P78504 1218 aa22.53■■□□□ 1.2
RPS28-202ENST00000449223 EAPPQ56P03 285 aaPredicted RBP22.53■■□□□ 1.2
RPS28-202ENST00000449223 PNMA1Q8ND90 353 aa22.53■■□□□ 1.2
RPS28-202ENST00000449223 ZNF341Q9BYN7 854 aa22.53■■□□□ 1.2
RPS28-202ENST00000449223 KAT14Q9H8E8 782 aa22.53■■□□□ 1.2
RPS28-202ENST00000449223 ZBTB21Q9ULJ3 1066 aa22.53■■□□□ 1.2
RPS28-202ENST00000449223 MPHOSPH10O00566 681 aaKnown RBP22.52■■□□□ 1.2
RPS28-202ENST00000449223 STK3Q13188 491 aa22.52■■□□□ 1.2
RPS28-202ENST00000449223 CDC37L1Q7L3B6 337 aa22.52■■□□□ 1.2
RPS28-202ENST00000449223 MICU3Q86XE3 530 aa22.52■■□□□ 1.2
RPS28-202ENST00000449223 RRAGCQ9HB90 399 aa22.52■■□□□ 1.2
RPS28-202ENST00000449223 CWC22Q9HCG8 908 aaKnown RBP22.52■■□□□ 1.2
RPS28-202ENST00000449223 ADM5C9JUS6 153 aa22.52■■□□□ 1.19
RPS28-202ENST00000449223 ASNSP08243 561 aa22.52■■□□□ 1.19
RPS28-202ENST00000449223 SHROOM1Q2M3G4 852 aaPredicted RBP22.52■■□□□ 1.19
RPS28-202ENST00000449223 FAM217BQ9NTX9 383 aaPredicted RBP22.52■■□□□ 1.19
RPS28-202ENST00000449223 CCDC196A0A1B0GTZ2 297 aa22.51■■□□□ 1.19
RPS28-202ENST00000449223 GOLGA8AA7E2F4 631 aa22.51■■□□□ 1.19
RPS28-202ENST00000449223 CCT2P78371 535 aaKnown RBP22.51■■□□□ 1.19
RPS28-202ENST00000449223 ICA1Q05084 483 aa22.51■■□□□ 1.19
RPS28-202ENST00000449223 SEPT2Q15019 361 aa22.51■■□□□ 1.19
RPS28-202ENST00000449223 PRAMEF18Q5VWM3 479 aa22.51■■□□□ 1.19
RPS28-202ENST00000449223 SIAH1Q8IUQ4 282 aa22.51■■□□□ 1.19
RPS28-202ENST00000449223 FANCBQ8NB91 859 aa22.51■■□□□ 1.19
RPS28-202ENST00000449223 SMARCC2Q8TAQ2 1214 aa22.51■■□□□ 1.19
RPS28-202ENST00000449223 KLRG1Q96E93 195 aa22.51■■□□□ 1.19
RPS28-202ENST00000449223 LDHDQ86WU2 507 aa22.5■■□□□ 1.19
RPS28-202ENST00000449223 NSUN7Q8NE18 718 aaKnown RBP22.5■■□□□ 1.19
RPS28-202ENST00000449223 MYL10Q9BUA6 226 aa22.5■■□□□ 1.19
RPS28-202ENST00000449223 NCOA5Q9HCD5 579 aaKnown RBP22.5■■□□□ 1.19
RPS28-202ENST00000449223 RBM28Q9NW13 759 aaKnown RBP22.5■■□□□ 1.19
RPS28-202ENST00000449223 NAP1L2Q9ULW6 460 aaPredicted RBP22.5■■□□□ 1.19
RPS28-202ENST00000449223 OTOFQ9HC10 1997 aa22.49■■□□□ 1.19
RPS28-202ENST00000449223 CTDNEP1O95476 244 aa22.49■■□□□ 1.19
RPS28-202ENST00000449223 SNHG28P0DPA3 235 aa22.49■■□□□ 1.19
RPS28-202ENST00000449223 CDC27P30260 824 aa22.49■■□□□ 1.19
RPS28-202ENST00000449223 NTRK3Q16288 839 aa22.49■■□□□ 1.19
RPS28-202ENST00000449223 RTN1Q16799 776 aa22.49■■□□□ 1.19
RPS28-202ENST00000449223 USP48Q86UV5 1035 aa22.49■■□□□ 1.19
RPS28-202ENST00000449223 CDCA5Q96FF9 252 aa22.49■■□□□ 1.19
RPS28-202ENST00000449223 POTEIP0CG38 1075 aa22.48■■□□□ 1.19
RPS28-202ENST00000449223 POTEJP0CG39 1038 aa22.48■■□□□ 1.19
RPS28-202ENST00000449223 EEF2P13639 858 aaKnown RBP22.48■■□□□ 1.19
RPS28-202ENST00000449223 NOL9Q5SY16 702 aaKnown RBP22.48■■□□□ 1.19
RPS28-202ENST00000449223 CLEC10AQ8IUN9 316 aa22.48■■□□□ 1.19
RPS28-202ENST00000449223 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.48■■□□□ 1.191e-6■□□□□ 9.4
RPS28-202ENST00000449223 NMRK2Q9NPI5 230 aa22.48■■□□□ 1.19
RPS28-202ENST00000449223 CLIP2Q9UDT6 1046 aa22.48■■□□□ 1.19
RPS28-202ENST00000449223 RXRAP19793 462 aa22.47■■□□□ 1.19
RPS28-202ENST00000449223 ADD1P35611 737 aaKnown RBP22.47■■□□□ 1.19
RPS28-202ENST00000449223 GRM4Q14833 912 aa22.47■■□□□ 1.19
RPS28-202ENST00000449223 RAB3GAP1Q15042 981 aa22.47■■□□□ 1.19
RPS28-202ENST00000449223 PPP1R12BO60237 982 aaPredicted RBP22.47■■□□□ 1.19
RPS28-202ENST00000449223 USP2O75604 605 aaPredicted RBP22.47■■□□□ 1.19
RPS28-202ENST00000449223 CDKL5O76039 1030 aa22.47■■□□□ 1.19
RPS28-202ENST00000449223 IFNAR1P17181 557 aa22.47■■□□□ 1.19
RPS28-202ENST00000449223 KIF5BP33176 963 aa22.47■■□□□ 1.19
RPS28-202ENST00000449223 HMGN5P82970 282 aaKnown RBP22.47■■□□□ 1.19
RPS28-202ENST00000449223 MAP3K11Q16584 847 aa22.47■■□□□ 1.19
RPS28-202ENST00000449223 CPLX2Q6PUV4 134 aaKnown RBP22.47■■□□□ 1.19
RPS28-202ENST00000449223 RAB11FIP4Q86YS3 637 aa22.47■■□□□ 1.19
RPS28-202ENST00000449223 SCYL3Q8IZE3 742 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms