RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 MORN1Q5T089 497 aa16.13■□□□□ 0.17
HMGB3-204ENST00000448905 WDR78Q5VTH9 848 aa16.13■□□□□ 0.17
HMGB3-204ENST00000448905 CEP85Q6P2H3 762 aa16.13■□□□□ 0.17
HMGB3-204ENST00000448905 CATSPERGQ6ZRH7 1159 aa16.13■□□□□ 0.17
HMGB3-204ENST00000448905 CLASRPQ8N2M8 674 aaKnown RBP16.13■□□□□ 0.17
HMGB3-204ENST00000448905 USP6NLQ92738 828 aa16.13■□□□□ 0.17
HMGB3-204ENST00000448905 CRNKL1Q9BZJ0 848 aaKnown RBP16.13■□□□□ 0.17
HMGB3-204ENST00000448905 PORCNQ9H237 461 aa16.13■□□□□ 0.17
HMGB3-204ENST00000448905 HOXC10Q9NYD6 342 aa16.13■□□□□ 0.17
HMGB3-204ENST00000448905 PTPRFP10586 1907 aa16.13■□□□□ 0.17
HMGB3-204ENST00000448905 ATP2B2Q01814 1243 aa16.12■□□□□ 0.17
HMGB3-204ENST00000448905 SLC9C2Q5TAH2 1124 aa16.12■□□□□ 0.17
HMGB3-204ENST00000448905 APBA2Q99767 749 aa16.12■□□□□ 0.17
HMGB3-204ENST00000448905 GDF15Q99988 308 aa16.12■□□□□ 0.17
HMGB3-204ENST00000448905 ANTXR1Q9H6X2 564 aa16.12■□□□□ 0.17
HMGB3-204ENST00000448905 ZMYND8Q9ULU4 1186 aaPredicted RBP16.12■□□□□ 0.17
HMGB3-204ENST00000448905 EXOC6BQ9Y2D4 811 aa16.12■□□□□ 0.17
HMGB3-204ENST00000448905 SLC15A5A6NIM6 579 aa16.11■□□□□ 0.17
HMGB3-204ENST00000448905 PEX10O60683 326 aa16.11■□□□□ 0.17
HMGB3-204ENST00000448905 IFIT2P09913 472 aaKnown RBP16.11■□□□□ 0.17
HMGB3-204ENST00000448905 SHROOM1Q2M3G4 852 aaPredicted RBP16.11■□□□□ 0.17
HMGB3-204ENST00000448905 CHMP4BQ9H444 224 aaKnown RBP16.11■□□□□ 0.17
HMGB3-204ENST00000448905 MCM9Q9NXL9 1143 aa16.11■□□□□ 0.17
HMGB3-204ENST00000448905 DOCK1Q14185 1865 aa16.11■□□□□ 0.17
HMGB3-204ENST00000448905 MPHOSPH10O00566 681 aaKnown RBP16.1■□□□□ 0.17
HMGB3-204ENST00000448905 SOX1O00570 391 aaPredicted RBP16.1■□□□□ 0.17
HMGB3-204ENST00000448905 STRNO43815 780 aa16.1■□□□□ 0.17
HMGB3-204ENST00000448905 MSCO60682 206 aa16.1■□□□□ 0.17
HMGB3-204ENST00000448905 HMMRO75330 724 aa16.1■□□□□ 0.17
HMGB3-204ENST00000448905 RLBP1P12271 317 aa16.1■□□□□ 0.17
HMGB3-204ENST00000448905 PTPREP23469 700 aa16.1■□□□□ 0.17
HMGB3-204ENST00000448905 PLCD1P51178 756 aa16.1■□□□□ 0.17
HMGB3-204ENST00000448905 COG2Q14746 738 aa16.1■□□□□ 0.17
HMGB3-204ENST00000448905 GPR153Q6NV75 609 aa16.1■□□□□ 0.17
HMGB3-204ENST00000448905 LBX2Q6XYB7 198 aa16.1■□□□□ 0.17
HMGB3-204ENST00000448905 RPAP2Q8IXW5 612 aaPredicted RBP16.1■□□□□ 0.17
HMGB3-204ENST00000448905 SLC17A8Q8NDX2 589 aa16.1■□□□□ 0.17
HMGB3-204ENST00000448905 RHPN1Q8TCX5 695 aa16.1■□□□□ 0.17
HMGB3-204ENST00000448905 NDUFB9Q9Y6M9 179 aa16.1■□□□□ 0.17
HMGB3-204ENST00000448905 SYN1P17600 705 aa16.09■□□□□ 0.17
HMGB3-204ENST00000448905 VCAM1P19320 739 aa16.09■□□□□ 0.17
HMGB3-204ENST00000448905 CNGA1P29973 690 aa16.09■□□□□ 0.17
HMGB3-204ENST00000448905 MNX1P50219 401 aaPredicted RBP16.09■□□□□ 0.17
HMGB3-204ENST00000448905 CCL14Q16627 93 aa16.09■□□□□ 0.17
HMGB3-204ENST00000448905 LHX8Q68G74 356 aa16.09■□□□□ 0.17
HMGB3-204ENST00000448905 DPP9Q86TI2 863 aa16.09■□□□□ 0.17
HMGB3-204ENST00000448905 ACER1Q8TDN7 264 aa16.09■□□□□ 0.17
HMGB3-204ENST00000448905 KIF1BPQ96EK5 621 aa16.09■□□□□ 0.17
HMGB3-204ENST00000448905 LRCH3Q96II8 777 aa16.09■□□□□ 0.17
HMGB3-204ENST00000448905 RIOK1Q9BRS2 568 aaKnown RBP16.09■□□□□ 0.17
HMGB3-204ENST00000448905 UBE2OQ9C0C9 1292 aaKnown RBP16.09■□□□□ 0.17
HMGB3-204ENST00000448905 RPAP3Q9H6T3 665 aaPredicted RBP16.09■□□□□ 0.17
HMGB3-204ENST00000448905 IL1RAPL2Q9NP60 686 aa16.09■□□□□ 0.17
HMGB3-204ENST00000448905 SLC5A4Q9NY91 659 aa16.09■□□□□ 0.17
HMGB3-204ENST00000448905 ALPK3Q96L96 1907 aa16.08■□□□□ 0.16
HMGB3-204ENST00000448905 RAB11FIP3O75154 756 aa16.08■□□□□ 0.16
HMGB3-204ENST00000448905 CCND3P30281 292 aaPredicted RBP16.08■□□□□ 0.16
HMGB3-204ENST00000448905 AMOTL1Q8IY63 956 aa16.08■□□□□ 0.16
HMGB3-204ENST00000448905 DDRGK1Q96HY6 314 aa16.08■□□□□ 0.16
HMGB3-204ENST00000448905 SWAP70Q9UH65 585 aa16.08■□□□□ 0.16
HMGB3-204ENST00000448905 GOLIM4O00461 696 aa16.07■□□□□ 0.16
HMGB3-204ENST00000448905 HOXC6P09630 235 aa16.07■□□□□ 0.16
HMGB3-204ENST00000448905 COL6A1P12109 1028 aa16.07■□□□□ 0.16
HMGB3-204ENST00000448905 PDE6AP16499 860 aa16.07■□□□□ 0.16
HMGB3-204ENST00000448905 SHMT1P34896 483 aa16.07■□□□□ 0.16
HMGB3-204ENST00000448905 MAGEA10P43363 369 aaPredicted RBP16.07■□□□□ 0.16
HMGB3-204ENST00000448905 SEPT2Q15019 361 aa16.07■□□□□ 0.16
HMGB3-204ENST00000448905 LRIT3Q3SXY7 679 aa16.07■□□□□ 0.16
HMGB3-204ENST00000448905 TDHQ8IZJ6 230 aa16.07■□□□□ 0.16
HMGB3-204ENST00000448905 PANK1Q8TE04 598 aa16.07■□□□□ 0.16
HMGB3-204ENST00000448905 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.07■□□□□ 0.16
HMGB3-204ENST00000448905 SH2D4AQ9H788 454 aa16.07■□□□□ 0.16
HMGB3-204ENST00000448905 ZNF532Q9HCE3 1301 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 APBB1O00213 710 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 CNMDO75829 334 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 GABPAQ06546 454 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 POTEEQ6S8J3 1075 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 TMEM179Q6ZVK1 233 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 MB21D1Q8N884 522 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 ARRDC4Q8NCT1 418 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 LPAR1Q92633 364 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 DNAJC2Q99543 621 aaKnown RBP16.06■□□□□ 0.16
HMGB3-204ENST00000448905 LBHD1Q9BQE6 289 aaPredicted RBP16.06■□□□□ 0.16
HMGB3-204ENST00000448905 TANGO6Q9C0B7 1094 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 SENP6Q9GZR1 1112 aaPredicted RBP16.06■□□□□ 0.16
HMGB3-204ENST00000448905 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.06■□□□□ 0.16
HMGB3-204ENST00000448905 BCL11AQ9H165 835 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 ARHGEF10LQ9HCE6 1279 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 BTBD7Q9P203 1132 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 PRKAG2Q9UGJ0 569 aa16.06■□□□□ 0.16
HMGB3-204ENST00000448905 DDX20Q9UHI6 824 aaKnown RBP16.06■□□□□ 0.16
HMGB3-204ENST00000448905 ATAD5Q96QE3 1844 aa16.05■□□□□ 0.16
HMGB3-204ENST00000448905 GRB14Q14449 540 aa16.05■□□□□ 0.16
HMGB3-204ENST00000448905 CCDC17Q96LX7 622 aa16.05■□□□□ 0.16
HMGB3-204ENST00000448905 ATP8A2Q9NTI2 1148 aa16.05■□□□□ 0.16
HMGB3-204ENST00000448905 DDX19BQ9UMR2 479 aa16.05■□□□□ 0.16
HMGB3-204ENST00000448905 RANBP2P49792 3224 aaKnown RBP16.04■□□□□ 0.16
HMGB3-204ENST00000448905 PFASO15067 1338 aa16.04■□□□□ 0.16
HMGB3-204ENST00000448905 SPDYE16A6NNV3 312 aaPredicted RBP16.04■□□□□ 0.16
HMGB3-204ENST00000448905 GUCY1A2P33402 732 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms