RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 C4AP0C0L4 1744 aa22.96■■□□□ 1.27
SHOX2-203ENST00000441443 C4BP0C0L5 1744 aa22.96■■□□□ 1.27
SHOX2-203ENST00000441443 RNF225M0QZC1 329 aaPredicted RBP22.96■■□□□ 1.27
SHOX2-203ENST00000441443 ACTN4O43707 911 aaKnown RBP22.96■■□□□ 1.27
SHOX2-203ENST00000441443 ERCC5P28715 1186 aaPredicted RBP22.96■■□□□ 1.27
SHOX2-203ENST00000441443 ARHGAP25P42331 645 aa22.96■■□□□ 1.27
SHOX2-203ENST00000441443 TUBB4BP68371 445 aa22.96■■□□□ 1.27
SHOX2-203ENST00000441443 DNAJC21Q5F1R6 531 aaKnown RBP22.96■■□□□ 1.27
SHOX2-203ENST00000441443 BRMS1Q9HCU9 246 aa22.96■■□□□ 1.27
SHOX2-203ENST00000441443 GEMIN8Q9NWZ8 242 aaKnown RBP22.96■■□□□ 1.27
SHOX2-203ENST00000441443 HDAC6Q9UBN7 1215 aa22.96■■□□□ 1.27
SHOX2-203ENST00000441443 SYNRGQ9UMZ2 1314 aa22.96■■□□□ 1.27
SHOX2-203ENST00000441443 SPATA1Q5VX52 437 aa22.95■■□□□ 1.27
SHOX2-203ENST00000441443 CCDC148Q8NFR7 591 aa22.95■■□□□ 1.27
SHOX2-203ENST00000441443 DEF6Q9H4E7 631 aa22.95■■□□□ 1.27
SHOX2-203ENST00000441443 RABEP2Q9H5N1 569 aa22.95■■□□□ 1.27
SHOX2-203ENST00000441443 FAM217BQ9NTX9 383 aaPredicted RBP22.95■■□□□ 1.27
SHOX2-203ENST00000441443 WWC3Q9ULE0 1092 aa22.95■■□□□ 1.27
SHOX2-203ENST00000441443 PRPF6O94906 941 aaKnown RBP22.95■■□□□ 1.26
SHOX2-203ENST00000441443 DIS3L2Q8IYB7 885 aaKnown RBP22.95■■□□□ 1.26
SHOX2-203ENST00000441443 ELOA2Q8IYF1 753 aaPredicted RBP22.95■■□□□ 1.26
SHOX2-203ENST00000441443 TRIML1Q8N9V2 468 aa22.95■■□□□ 1.26
SHOX2-203ENST00000441443 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.95■■□□□ 1.26
SHOX2-203ENST00000441443 GUCA1BQ9UMX6 200 aa22.95■■□□□ 1.26
SHOX2-203ENST00000441443 NR5A1Q13285 461 aa22.94■■□□□ 1.26
SHOX2-203ENST00000441443 TCIRG1Q13488 830 aa22.94■■□□□ 1.26
SHOX2-203ENST00000441443 WDR93Q6P2C0 686 aa22.94■■□□□ 1.26
SHOX2-203ENST00000441443 CNGA4Q8IV77 575 aa22.94■■□□□ 1.26
SHOX2-203ENST00000441443 EFCAB13Q8IY85 973 aa22.94■■□□□ 1.26
SHOX2-203ENST00000441443 GSPT2Q8IYD1 628 aaKnown RBP22.94■■□□□ 1.26
SHOX2-203ENST00000441443 XAGE2Q96GT9 111 aa22.94■■□□□ 1.26
SHOX2-203ENST00000441443 AMPD2Q01433 879 aa22.94■■□□□ 1.26
SHOX2-203ENST00000441443 HLFQ16534 295 aa22.94■■□□□ 1.26
SHOX2-203ENST00000441443 TADA2BQ86TJ2 420 aa22.94■■□□□ 1.26
SHOX2-203ENST00000441443 GPATCH11Q8N954 259 aa22.94■■□□□ 1.26
SHOX2-203ENST00000441443 CSRNP2Q9H175 543 aa22.94■■□□□ 1.26
SHOX2-203ENST00000441443 HPCAL4Q9UM19 191 aa22.94■■□□□ 1.26
SHOX2-203ENST00000441443 ZFYP08048 801 aaPredicted RBP22.93■■□□□ 1.26
SHOX2-203ENST00000441443 FILIP1LQ4L180 1135 aa22.93■■□□□ 1.26
SHOX2-203ENST00000441443 SMARCC1Q92922 1105 aaPredicted RBP22.93■■□□□ 1.26
SHOX2-203ENST00000441443 HINFPQ9BQA5 517 aa22.93■■□□□ 1.26
SHOX2-203ENST00000441443 SRGAP2O75044 1071 aa22.93■■□□□ 1.26
SHOX2-203ENST00000441443 TFR2Q9UP52 801 aa22.93■■□□□ 1.26
SHOX2-203ENST00000441443 TBC1D2BQ9UPU7 963 aa22.93■■□□□ 1.26
SHOX2-203ENST00000441443 ARFGEF2Q9Y6D5 1785 aa22.92■■□□□ 1.26
SHOX2-203ENST00000441443 SSRP1Q08945 709 aaKnown RBP22.92■■□□□ 1.26
SHOX2-203ENST00000441443 TICAM2Q86XR7 235 aa22.92■■□□□ 1.26
SHOX2-203ENST00000441443 CMTR1Q8N1G2 835 aaKnown RBP22.92■■□□□ 1.26
SHOX2-203ENST00000441443 NUP88Q99567 741 aaPredicted RBP22.92■■□□□ 1.26
SHOX2-203ENST00000441443 A0A087X0B3 334 aa22.92■■□□□ 1.26
SHOX2-203ENST00000441443 GGCXP38435 758 aa22.92■■□□□ 1.26
SHOX2-203ENST00000441443 IFIT5Q13325 482 aaKnown RBP22.92■■□□□ 1.26
SHOX2-203ENST00000441443 CAPZA3Q96KX2 299 aa22.92■■□□□ 1.26
SHOX2-203ENST00000441443 VPS16Q9H269 839 aa22.92■■□□□ 1.26
SHOX2-203ENST00000441443 ABHD10Q9NUJ1 306 aa22.92■■□□□ 1.26
SHOX2-203ENST00000441443 WDR19Q8NEZ3 1342 aa22.92■■□□□ 1.26
SHOX2-203ENST00000441443 STARD3NLO95772 234 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 AARSP49588 968 aaKnown RBP eCLIP22.91■■□□□ 1.264e-6■■■■□ 24
SHOX2-203ENST00000441443 LIG3P49916 1009 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 NKX1-1Q15270 411 aaPredicted RBP22.91■■□□□ 1.26
SHOX2-203ENST00000441443 SAFBQ15424 915 aaKnown RBP eCLIP22.91■■□□□ 1.26
SHOX2-203ENST00000441443 TMEM67Q5HYA8 995 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 TMTC1Q8IUR5 882 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 SPATA20Q8TB22 786 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 STAMQ92783 540 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 MMS19Q96T76 1030 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 TUBBP07437 444 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 CCT5P48643 541 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 USP14P54578 494 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 CUL4BQ13620 913 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 CDKAL1Q5VV42 579 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 LMTK3Q96Q04 1460 aa22.91■■□□□ 1.26
SHOX2-203ENST00000441443 MMP1P03956 469 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 STIM1Q13586 685 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 IGDCC4Q8TDY8 1250 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 EPSTI1Q96J88 318 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 CHP1Q99653 195 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 EHD4Q9H223 541 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 N4BP3O15049 544 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 CTCFLQ8NI51 663 aaPredicted RBP22.9■■□□□ 1.26
SHOX2-203ENST00000441443 NCAPGQ9BPX3 1015 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 VIPAS39Q9H9C1 493 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 CDHR2Q9BYE9 1310 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 A0A087WUV0 522 aaPredicted RBP22.9■■□□□ 1.26
SHOX2-203ENST00000441443 EXOC5O00471 708 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 METTL24Q5JXM2 366 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 CTAGE1Q96RT6 745 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 LY9Q9HBG7 655 aa22.9■■□□□ 1.26
SHOX2-203ENST00000441443 MYH8P13535 1937 aa22.89■■□□□ 1.26
SHOX2-203ENST00000441443 KANK3Q6NY19 840 aa22.89■■□□□ 1.26
SHOX2-203ENST00000441443 LDHAL6AQ6ZMR3 332 aa22.89■■□□□ 1.26
SHOX2-203ENST00000441443 OXER1Q8TDS5 423 aa22.89■■□□□ 1.26
SHOX2-203ENST00000441443 ZC3H4Q9UPT8 1303 aaKnown RBP22.89■■□□□ 1.25
SHOX2-203ENST00000441443 DPYDQ12882 1025 aa22.89■■□□□ 1.25
SHOX2-203ENST00000441443 CYP26C1Q6V0L0 522 aa22.89■■□□□ 1.25
SHOX2-203ENST00000441443 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.89■■□□□ 1.25
SHOX2-203ENST00000441443 KAT2BQ92831 832 aa22.89■■□□□ 1.25
SHOX2-203ENST00000441443 ISCA1Q9BUE6 129 aa22.89■■□□□ 1.25
SHOX2-203ENST00000441443 KAT14Q9H8E8 782 aa22.89■■□□□ 1.25
SHOX2-203ENST00000441443 CTNND2Q9UQB3 1225 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms