RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 MYH15Q9Y2K3 1946 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 ORC4O43929 436 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 SLFN14P0C7P3 912 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 IL1R1P14778 569 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 ATP2B1P20020 1258 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 TFAP4Q01664 338 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 BBXQ8WY36 941 aaPredicted RBP16.26■□□□□ 0.19
LIMD1-202ENST00000440097 ERCC4Q92889 916 aaPredicted RBP16.26■□□□□ 0.19
LIMD1-202ENST00000440097 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.26■□□□□ 0.19
LIMD1-202ENST00000440097 SRGNP10124 158 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 XBP1P17861 261 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 RCAN1P53805 252 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 SBK1Q52WX2 424 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 SP8Q8IXZ3 490 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 TEX11Q8IYF3 940 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 FLAD1Q8NFF5 587 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 KIF18AQ8NI77 898 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 FBXO41Q8TF61 875 aa16.26■□□□□ 0.19
LIMD1-202ENST00000440097 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.26■□□□□ 0.19
LIMD1-202ENST00000440097 MORC2Q9Y6X9 1032 aaPredicted RBP16.26■□□□□ 0.19
LIMD1-202ENST00000440097 PLEKHA8P1O95397 391 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 MMP1P03956 469 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 PDE6BP35913 854 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 EZH2Q15910 746 aaKnown RBP16.25■□□□□ 0.19
LIMD1-202ENST00000440097 C12orf60Q5U649 245 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 DPP8Q6V1X1 898 aaPredicted RBP16.25■□□□□ 0.19
LIMD1-202ENST00000440097 NBPF11Q86T75 865 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 CACTINQ8WUQ7 758 aaKnown RBP16.25■□□□□ 0.19
LIMD1-202ENST00000440097 ZNF592Q92610 1267 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 ATP6V0A2Q9Y487 856 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 V9GY48 417 aaPredicted RBP16.25■□□□□ 0.19
LIMD1-202ENST00000440097 FGRP09769 529 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 CALM1P0DP23 149 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 CALM2P0DP24 149 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 CALM3P0DP25 149 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 NPR1P16066 1061 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 NDUFA8P51970 172 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 SNW1Q13573 536 aaKnown RBP16.25■□□□□ 0.19
LIMD1-202ENST00000440097 PPP2R5BQ15173 497 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 TMC4Q7Z404 712 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 NOSTRINQ8IVI9 506 aa16.25■□□□□ 0.19
LIMD1-202ENST00000440097 ZNF219Q9P2Y4 722 aaPredicted RBP16.25■□□□□ 0.19
LIMD1-202ENST00000440097 TSPY3P0CV98 308 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 TSPY8P0CW00 308 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 ALDH1B1P30837 517 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 DOK7Q18PE1 504 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 SLF2Q8IX21 1173 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 ZNF444Q8N0Y2 327 aaPredicted RBP16.24■□□□□ 0.19
LIMD1-202ENST00000440097 SLC44A5Q8NCS7 719 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 TBC1D22AQ8WUA7 517 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 RTFDC1Q9BY42 306 aaPredicted RBP16.24■□□□□ 0.19
LIMD1-202ENST00000440097 KAT14Q9H8E8 782 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 VPS54Q9P1Q0 977 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 KLRG2A4D1S0 409 aaPredicted RBP16.24■□□□□ 0.19
LIMD1-202ENST00000440097 TROAPQ12815 778 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 NR5A1Q13285 461 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 ZRSR1Q15695 479 aaKnown RBP16.24■□□□□ 0.19
LIMD1-202ENST00000440097 CCDC144BQ3MJ40 725 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.24■□□□□ 0.19
LIMD1-202ENST00000440097 JMYQ8N9B5 988 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 RNF26Q9BY78 433 aaPredicted RBP16.24■□□□□ 0.19
LIMD1-202ENST00000440097 DNAJC25Q9H1X3 360 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 RBM28Q9NW13 759 aaKnown RBP16.24■□□□□ 0.19
LIMD1-202ENST00000440097 CLIP2Q9UDT6 1046 aa16.24■□□□□ 0.19
LIMD1-202ENST00000440097 CTAGE5O15320 804 aa16.23■□□□□ 0.19
LIMD1-202ENST00000440097 PLCD1P51178 756 aa16.23■□□□□ 0.19
LIMD1-202ENST00000440097 CEP135Q66GS9 1140 aa16.23■□□□□ 0.19
LIMD1-202ENST00000440097 STX8Q9UNK0 236 aa16.23■□□□□ 0.19
LIMD1-202ENST00000440097 NID2Q14112 1375 aa16.23■□□□□ 0.19
LIMD1-202ENST00000440097 DDAH1O94760 285 aa16.23■□□□□ 0.19
LIMD1-202ENST00000440097 SLC39A14Q15043 492 aa16.23■□□□□ 0.19
LIMD1-202ENST00000440097 MAST2Q6P0Q8 1798 aa16.23■□□□□ 0.19
LIMD1-202ENST00000440097 A0A1W2PQ27 194 aa16.22■□□□□ 0.19
LIMD1-202ENST00000440097 A0A1W2PQ64 194 aa16.22■□□□□ 0.19
LIMD1-202ENST00000440097 A0A1W2PQD8 194 aa16.22■□□□□ 0.19
LIMD1-202ENST00000440097 ZNF165P49910 485 aa16.22■□□□□ 0.19
LIMD1-202ENST00000440097 PPP4CP60510 307 aa16.22■□□□□ 0.19
LIMD1-202ENST00000440097 USP17L3A6NCW0 530 aa16.22■□□□□ 0.19
LIMD1-202ENST00000440097 USP17L4A6NCW7 530 aa16.22■□□□□ 0.19
LIMD1-202ENST00000440097 PLCG2P16885 1265 aa16.22■□□□□ 0.19
LIMD1-202ENST00000440097 PICALMQ13492 652 aa16.22■□□□□ 0.19
LIMD1-202ENST00000440097 RBM43Q6ZSC3 357 aaKnown RBP16.22■□□□□ 0.19
LIMD1-202ENST00000440097 USP17L1Q7RTZ2 530 aa16.22■□□□□ 0.19
LIMD1-202ENST00000440097 ENGASEQ8NFI3 743 aa16.22■□□□□ 0.19
LIMD1-202ENST00000440097 MKRN1Q9UHC7 482 aaKnown RBP16.22■□□□□ 0.19
LIMD1-202ENST00000440097 BAZ2BQ9UIF8 2168 aaKnown RBP16.22■□□□□ 0.19
LIMD1-202ENST00000440097 RGS22Q8NE09 1264 aa16.21■□□□□ 0.19
LIMD1-202ENST00000440097 MASTLQ96GX5 879 aa16.21■□□□□ 0.19
LIMD1-202ENST00000440097 COA1Q9GZY4 146 aa16.21■□□□□ 0.19
LIMD1-202ENST00000440097 WDHD1O75717 1129 aaPredicted RBP16.21■□□□□ 0.19
LIMD1-202ENST00000440097 TERF2Q15554 542 aa16.21■□□□□ 0.19
LIMD1-202ENST00000440097 FMR1NBQ8N0W7 255 aaPredicted RBP16.21■□□□□ 0.19
LIMD1-202ENST00000440097 OXER1Q8TDS5 423 aa16.21■□□□□ 0.19
LIMD1-202ENST00000440097 TMEM51Q9NW97 253 aa16.21■□□□□ 0.19
LIMD1-202ENST00000440097 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.21■□□□□ 0.19
LIMD1-202ENST00000440097 V9GYY5 206 aaPredicted RBP16.21■□□□□ 0.19
LIMD1-202ENST00000440097 GPR75-ASB3A0A0A6YYF3 556 aa16.21■□□□□ 0.18
LIMD1-202ENST00000440097 USP27XA6NNY8 438 aa16.21■□□□□ 0.18
LIMD1-202ENST00000440097 KMT5BQ4FZB7 885 aa16.21■□□□□ 0.18
LIMD1-202ENST00000440097 CERS3Q8IU89 383 aa16.21■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms