RNA–Protein interactions for RNA: ENST00000430200.1

HDAC4-202, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 578 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-202ENST00000430200 HOXD10P28358 340 aa14.28□□□□□ -0.12
HDAC4-202ENST00000430200 GCLCP48506 637 aaPredicted RBP14.28□□□□□ -0.12
HDAC4-202ENST00000430200 IRX3P78415 501 aaPredicted RBP14.28□□□□□ -0.12
HDAC4-202ENST00000430200 SEPT2Q15019 361 aa14.28□□□□□ -0.12
HDAC4-202ENST00000430200 RAB3GAP1Q15042 981 aa14.28□□□□□ -0.12
HDAC4-202ENST00000430200 Q3C1V9 767 aa14.28□□□□□ -0.12
HDAC4-202ENST00000430200 OTUD7AQ8TE49 926 aaPredicted RBP14.28□□□□□ -0.12
HDAC4-202ENST00000430200 U2AF1L4Q8WU68 220 aaKnown RBP14.28□□□□□ -0.12
HDAC4-202ENST00000430200 TRIB2Q92519 343 aa14.28□□□□□ -0.12
HDAC4-202ENST00000430200 CRNKL1Q9BZJ0 848 aaKnown RBP14.28□□□□□ -0.12
HDAC4-202ENST00000430200 LRRCC1Q9C099 1032 aa14.28□□□□□ -0.12
HDAC4-202ENST00000430200 RNF208Q9H0X6 261 aa14.28□□□□□ -0.12
HDAC4-202ENST00000430200 PAK6Q9NQU5 681 aaPredicted RBP14.28□□□□□ -0.12
HDAC4-202ENST00000430200 MCM9Q9NXL9 1143 aa14.28□□□□□ -0.12
HDAC4-202ENST00000430200 TAOK2Q9UL54 1235 aa14.28□□□□□ -0.12
HDAC4-202ENST00000430200 PCDHB15Q9Y5E8 787 aa14.28□□□□□ -0.12
HDAC4-202ENST00000430200 ABCB5Q2M3G0 1257 aa14.27□□□□□ -0.13
HDAC4-202ENST00000430200 CERKLQ49MI3 558 aaPredicted RBP14.27□□□□□ -0.13
HDAC4-202ENST00000430200 CERS3Q8IU89 383 aa14.27□□□□□ -0.13
HDAC4-202ENST00000430200 PXYLP1Q8TE99 480 aa14.27□□□□□ -0.13
HDAC4-202ENST00000430200 PUS7LQ9H0K6 701 aaKnown RBP14.27□□□□□ -0.13
HDAC4-202ENST00000430200 GINM1Q9NU53 330 aa14.27□□□□□ -0.13
HDAC4-202ENST00000430200 TMOD4Q9NZQ9 345 aa14.27□□□□□ -0.13
HDAC4-202ENST00000430200 PCDH10Q9P2E7 1040 aa14.27□□□□□ -0.13
HDAC4-202ENST00000430200 BIN2Q9UBW5 565 aaPredicted RBP14.27□□□□□ -0.13
HDAC4-202ENST00000430200 C19orf81C9J6K1 198 aa14.26□□□□□ -0.13
HDAC4-202ENST00000430200 AKR1B1P15121 316 aa14.26□□□□□ -0.13
HDAC4-202ENST00000430200 ERVK-9P63128 1117 aa14.26□□□□□ -0.13
HDAC4-202ENST00000430200 ERVK-24P63145 666 aa14.26□□□□□ -0.13
HDAC4-202ENST00000430200 PABPC4Q13310 644 aaKnown RBP eCLIP14.26□□□□□ -0.13
HDAC4-202ENST00000430200 TMED8Q6PL24 325 aaPredicted RBP14.26□□□□□ -0.13
HDAC4-202ENST00000430200 USP17L2Q6R6M4 530 aa14.26□□□□□ -0.13
HDAC4-202ENST00000430200 TTC6Q86TZ1 520 aa14.26□□□□□ -0.13
HDAC4-202ENST00000430200 SIAH1Q8IUQ4 282 aa14.26□□□□□ -0.13
HDAC4-202ENST00000430200 DIS3LQ8TF46 1054 aaKnown RBP14.26□□□□□ -0.13
HDAC4-202ENST00000430200 FEZ1Q99689 392 aa14.26□□□□□ -0.13
HDAC4-202ENST00000430200 PAGR1Q9BTK6 254 aa14.26□□□□□ -0.13
HDAC4-202ENST00000430200 KIAA1683Q9H0B3 1180 aa14.26□□□□□ -0.13
HDAC4-202ENST00000430200 SPDYE16A6NNV3 312 aaPredicted RBP14.25□□□□□ -0.13
HDAC4-202ENST00000430200 H0YGN5 161 aa14.25□□□□□ -0.13
HDAC4-202ENST00000430200 POLR3DP05423 398 aaPredicted RBP14.25□□□□□ -0.13
HDAC4-202ENST00000430200 CCL14Q16627 93 aa14.25□□□□□ -0.13
HDAC4-202ENST00000430200 USP6NLQ92738 828 aa14.25□□□□□ -0.13
HDAC4-202ENST00000430200 COA7Q96BR5 231 aa14.25□□□□□ -0.13
HDAC4-202ENST00000430200 DEFB118Q96PH6 123 aa14.25□□□□□ -0.13
HDAC4-202ENST00000430200 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.25□□□□□ -0.13
HDAC4-202ENST00000430200 DCTPP1Q9H773 170 aa14.25□□□□□ -0.13
HDAC4-202ENST00000430200 BTBD7Q9P203 1132 aa14.25□□□□□ -0.13
HDAC4-202ENST00000430200 LTBP2Q14767 1821 aa14.25□□□□□ -0.13
HDAC4-202ENST00000430200 LAMA4Q16363 1823 aa14.25□□□□□ -0.13
HDAC4-202ENST00000430200 MCM3APO60318 1980 aa14.24□□□□□ -0.13
HDAC4-202ENST00000430200 LCTP09848 1927 aa14.24□□□□□ -0.13
HDAC4-202ENST00000430200 FARP2O94887 1054 aaPredicted RBP14.24□□□□□ -0.13
HDAC4-202ENST00000430200 MNX1P50219 401 aaPredicted RBP14.24□□□□□ -0.13
HDAC4-202ENST00000430200 RRP1P56182 461 aaKnown RBP14.24□□□□□ -0.13
HDAC4-202ENST00000430200 UBXN2AP68543 259 aa14.24□□□□□ -0.13
HDAC4-202ENST00000430200 CRISPLD2Q9H0B8 497 aa14.24□□□□□ -0.13
HDAC4-202ENST00000430200 RPAP3Q9H6T3 665 aaPredicted RBP14.24□□□□□ -0.13
HDAC4-202ENST00000430200 EPB41L4AQ9HCS5 686 aaPredicted RBP14.24□□□□□ -0.13
HDAC4-202ENST00000430200 SALL3Q9BXA9 1300 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 SGPL1O95470 568 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 HMGCRP04035 888 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 CYP2B6P20813 491 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 UBE3CQ15386 1083 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 HABP4Q5JVS0 413 aaKnown RBP14.23□□□□□ -0.13
HDAC4-202ENST00000430200 MORN1Q5T089 497 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 MAP3K21Q5TCX8 1036 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 C12orf60Q5U649 245 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 CATSPERGQ6ZRH7 1159 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 GPR142Q7Z601 462 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 GPRC5AQ8NFJ5 357 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 ECHDC1Q9NTX5 307 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 LRRC37A2A6NM11 1700 aa14.23□□□□□ -0.13
HDAC4-202ENST00000430200 ROBO3Q96MS0 1386 aa14.22□□□□□ -0.13
HDAC4-202ENST00000430200 USP17L12C9JPN9 530 aa14.22□□□□□ -0.13
HDAC4-202ENST00000430200 USP17L21D6R901 530 aa14.22□□□□□ -0.13
HDAC4-202ENST00000430200 M0R2C6 588 aa14.22□□□□□ -0.13
HDAC4-202ENST00000430200 MPHOSPH10O00566 681 aaKnown RBP14.22□□□□□ -0.13
HDAC4-202ENST00000430200 CTR9Q6PD62 1173 aa14.22□□□□□ -0.13
HDAC4-202ENST00000430200 C16orf86Q6ZW13 317 aa14.22□□□□□ -0.13
HDAC4-202ENST00000430200 PI4K2BQ8TCG2 481 aa14.22□□□□□ -0.13
HDAC4-202ENST00000430200 OSBP2Q969R2 916 aa14.22□□□□□ -0.13
HDAC4-202ENST00000430200 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.22□□□□□ -0.13
HDAC4-202ENST00000430200 FLRT1Q9NZU1 646 aa14.22□□□□□ -0.13
HDAC4-202ENST00000430200 COLQQ9Y215 455 aaPredicted RBP14.22□□□□□ -0.13
HDAC4-202ENST00000430200 USP17L15C9J2P7 530 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 USP17L13C9JLJ4 530 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 USP17L11C9JVI0 530 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 USP17L18D6R9N7 530 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 USP17L22D6RA61 530 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 USP17L17D6RBQ6 530 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 USP17L19D6RCP7 530 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 USP17L20D6RJB6 530 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 CDK8P49336 464 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 USP17L24Q0WX57 530 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 LBX2Q6XYB7 198 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 KBTBD3Q8NAB2 608 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 CRBNQ96SW2 442 aa14.21□□□□□ -0.13
HDAC4-202ENST00000430200 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.21□□□□□ -0.13
HDAC4-202ENST00000430200 CHMP4BQ9H444 224 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 150.6 ms