RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 ST7Q9NRC1 585 aa12.51□□□□□ -0.41
LIMS1-207ENST00000422797 RMND1Q9NWS8 449 aa12.51□□□□□ -0.41
LIMS1-207ENST00000422797 TMOD3Q9NYL9 352 aa12.51□□□□□ -0.41
LIMS1-207ENST00000422797 ZSWIM5Q9P217 1185 aa12.51□□□□□ -0.41
LIMS1-207ENST00000422797 ADD3Q9UEY8 706 aaKnown RBP12.51□□□□□ -0.41
LIMS1-207ENST00000422797 MYH3P11055 1940 aa12.5□□□□□ -0.41
LIMS1-207ENST00000422797 CHD4Q14839 1912 aa12.5□□□□□ -0.41
LIMS1-207ENST00000422797 ERVV-1B6SEH8 477 aa12.5□□□□□ -0.41
LIMS1-207ENST00000422797 KRT2P35908 639 aa12.5□□□□□ -0.41
LIMS1-207ENST00000422797 TRAPPC10P48553 1259 aa12.5□□□□□ -0.41
LIMS1-207ENST00000422797 ADKP55263 362 aaKnown RBP12.5□□□□□ -0.41
LIMS1-207ENST00000422797 CHRNA2Q15822 529 aa12.5□□□□□ -0.41
LIMS1-207ENST00000422797 TOM1L2Q6ZVM7 507 aa12.5□□□□□ -0.41
LIMS1-207ENST00000422797 SPATA5Q8NB90 893 aa12.5□□□□□ -0.41
LIMS1-207ENST00000422797 SYTL4Q96C24 671 aaPredicted RBP12.5□□□□□ -0.41
LIMS1-207ENST00000422797 FAM89AQ96GI7 184 aa12.5□□□□□ -0.41
LIMS1-207ENST00000422797 RPGRIP1Q96KN7 1286 aa12.5□□□□□ -0.41
LIMS1-207ENST00000422797 NAPGQ99747 312 aaPredicted RBP12.5□□□□□ -0.41
LIMS1-207ENST00000422797 UBAC1Q9BSL1 405 aa12.5□□□□□ -0.41
LIMS1-207ENST00000422797 LIMA1Q9UHB6 759 aaKnown RBP12.5□□□□□ -0.41
LIMS1-207ENST00000422797 ANAPC4Q9UJX5 808 aa12.5□□□□□ -0.41
LIMS1-207ENST00000422797 PLCH1Q4KWH8 1693 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 DISP2A7MBM2 1401 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 POLR3GO15318 223 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-207ENST00000422797 SASH3O75995 380 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 SEC31AO94979 1220 aaKnown RBP12.49□□□□□ -0.41
LIMS1-207ENST00000422797 MBD4O95243 580 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 PRR29P0C7W0 189 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 TDO2P48775 406 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 HNRNPH2P55795 449 aaKnown RBP12.49□□□□□ -0.41
LIMS1-207ENST00000422797 PI16Q6UXB8 463 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 CYP26C1Q6V0L0 522 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 APTXQ7Z2E3 356 aaKnown RBP12.49□□□□□ -0.41
LIMS1-207ENST00000422797 ZNF654Q8IZM8 581 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 FAM177A1Q8N128 213 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-207ENST00000422797 FANCBQ8NB91 859 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 EHBP1Q8NDI1 1231 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 ESR2Q92731 530 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 GREM2Q9H772 168 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 EPB41L4AQ9HCS5 686 aaPredicted RBP12.49□□□□□ -0.41
LIMS1-207ENST00000422797 MED4Q9NPJ6 270 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 SHANK3Q9BYB0 1731 aa12.49□□□□□ -0.41
LIMS1-207ENST00000422797 CTAGE15A4D2H0 777 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 LRRC10BA6NIK2 292 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 IRS4O14654 1257 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-207ENST00000422797 PRPF3O43395 683 aaKnown RBP12.48□□□□□ -0.41
LIMS1-207ENST00000422797 RPS6KA5O75582 802 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 CTAGE8P0CG41 777 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 RXRAP19793 462 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 DPYDQ12882 1025 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 KIF4BQ2VIQ3 1234 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 MAP9Q49MG5 647 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 HSP90B2PQ58FF3 399 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 LEKR1Q6ZMV7 388 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 CTAGE6Q86UF2 777 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 CTAGE4Q8IX94 777 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 CSRNP2Q9H175 543 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 VIPAS39Q9H9C1 493 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 PRDM11Q9NQV5 511 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 RWDD2AQ9UIY3 292 aa12.48□□□□□ -0.41
LIMS1-207ENST00000422797 GSG1L2A8MUP6 293 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 UBAP1LF5GYI3 381 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 HAX1O00165 279 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 FOXN1O15353 648 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 PHKA1P46020 1223 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 RBL2Q08999 1139 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 GOLGA8FQ08AF8 430 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 GOLGA8DPQ0D2H9 430 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 KARSQ15046 597 aaKnown RBP12.47□□□□□ -0.41
LIMS1-207ENST00000422797 BEND6Q5SZJ8 279 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-207ENST00000422797 WDR93Q6P2C0 686 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 ZNF662Q6ZS27 426 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 TRMT44Q8IYL2 757 aaKnown RBP12.47□□□□□ -0.41
LIMS1-207ENST00000422797 MAGEB6Q8N7X4 407 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 CCDC148Q8NFR7 591 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 CTCFLQ8NI51 663 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-207ENST00000422797 FAM71BQ8TC56 605 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 PAGE5Q96GU1 130 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 PHF20Q9BVI0 1012 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 MRPL44Q9H9J2 332 aaKnown RBP12.47□□□□□ -0.41
LIMS1-207ENST00000422797 SENP2Q9HC62 589 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 SAMSN1Q9NSI8 373 aaKnown RBP12.47□□□□□ -0.41
LIMS1-207ENST00000422797 PODXL2Q9NZ53 605 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 PCDHB6Q9Y5E3 794 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 MYO5AQ9Y4I1 1855 aaKnown RBP12.47□□□□□ -0.41
LIMS1-207ENST00000422797 BCORQ6W2J9 1755 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 SOWAHDA6NJG2 315 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 GTPBP6O43824 516 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-207ENST00000422797 DDAH1O94760 285 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 MYL1P05976 194 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 ACTN2P35609 894 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 IRX5P78411 483 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-207ENST00000422797 ZSCAN26Q16670 478 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 RAD9BQ6WBX8 426 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 RUBCNQ92622 972 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 IQCDQ96DY2 449 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 DESI2Q9BSY9 194 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 MYL10Q9BUA6 226 aa12.47□□□□□ -0.41
LIMS1-207ENST00000422797 MKRN1Q9UHC7 482 aaKnown RBP12.47□□□□□ -0.41
LIMS1-207ENST00000422797 KCNJ14Q9UNX9 436 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms