RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 BMP8BP34820 402 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 SHMT1P34896 483 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 MDM2Q00987 491 aaPredicted RBP9.89□□□□□ -0.83
VIM-202ENST00000421459 SLFNL1Q499Z3 407 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 TATDN1Q6P1N9 297 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 CATSPERGQ6ZRH7 1159 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 DEFB123Q8N688 67 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 NPLOC4Q8TAT6 608 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 SOCS4Q8WXH5 440 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 EDC3Q96F86 508 aaKnown RBP9.89□□□□□ -0.83
VIM-202ENST00000421459 FEZ1Q99689 392 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 ALPK3Q96L96 1907 aa9.89□□□□□ -0.83
VIM-202ENST00000421459 USP17L15C9J2P7 530 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 USP17L13C9JLJ4 530 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 USP17L11C9JVI0 530 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 USP17L18D6R9N7 530 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 USP17L22D6RA61 530 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 USP17L17D6RBQ6 530 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 USP17L19D6RCP7 530 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 USP17L20D6RJB6 530 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 SMIM22K7EJ46 135 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 CYP2D6P10635 497 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 CAPN2P17655 700 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 VCAM1P19320 739 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 CYP2C19P33261 490 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 RGS2P41220 211 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 USP17L24Q0WX57 530 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 MAP2K5Q13163 448 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 SEPT2Q15019 361 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 ABCB5Q2M3G0 1257 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 CERKLQ49MI3 558 aaPredicted RBP9.88□□□□□ -0.83
VIM-202ENST00000421459 KIAA1755Q5JYT7 1200 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 CEP85Q6P2H3 762 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 AACSQ86V21 672 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 TRPV1Q8NER1 839 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 PANK1Q8TE04 598 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 C12orf42Q96LP6 360 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 RIOK1Q9BRS2 568 aaKnown RBP9.88□□□□□ -0.83
VIM-202ENST00000421459 UBE2OQ9C0C9 1292 aaKnown RBP9.88□□□□□ -0.83
VIM-202ENST00000421459 RPAP3Q9H6T3 665 aaPredicted RBP9.88□□□□□ -0.83
VIM-202ENST00000421459 CWC22Q9HCG8 908 aaKnown RBP9.88□□□□□ -0.83
VIM-202ENST00000421459 IL1RAPL2Q9NP60 686 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 SERPINB13Q9UIV8 391 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 RABGAP1Q9Y3P9 1069 aa9.88□□□□□ -0.83
VIM-202ENST00000421459 DDX60LQ5H9U9 1706 aaKnown RBP9.87□□□□□ -0.83
VIM-202ENST00000421459 UNC80Q8N2C7 3258 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 EYSQ5T1H1 3165 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 A0A1W2PRG0 241 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 APBB1O00213 710 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 CHGBP05060 677 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 PTPREP23469 700 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 CNGA1P29973 690 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 ATN1P54259 1190 aaPredicted RBP9.87□□□□□ -0.83
VIM-202ENST00000421459 ANO1Q5XXA6 986 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 CLEC10AQ8IUN9 316 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 FTSJ3Q8IY81 847 aaKnown RBP9.87□□□□□ -0.83
VIM-202ENST00000421459 TDHQ8IZJ6 230 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 SLC44A5Q8NCS7 719 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 APBA2Q99767 749 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 SENP6Q9GZR1 1112 aaPredicted RBP9.87□□□□□ -0.83
VIM-202ENST00000421459 KIAA1683Q9H0B3 1180 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 GINM1Q9NU53 330 aa9.87□□□□□ -0.83
VIM-202ENST00000421459 SPDYE16A6NNV3 312 aaPredicted RBP9.86□□□□□ -0.83
VIM-202ENST00000421459 MPHOSPH10O00566 681 aaKnown RBP9.86□□□□□ -0.83
VIM-202ENST00000421459 POLR3DP05423 398 aaPredicted RBP9.86□□□□□ -0.83
VIM-202ENST00000421459 TRMT44Q8IYL2 757 aaKnown RBP9.86□□□□□ -0.83
VIM-202ENST00000421459 SDR42E1Q8WUS8 393 aa9.86□□□□□ -0.83
VIM-202ENST00000421459 DYNLL2Q96FJ2 89 aa9.86□□□□□ -0.83
VIM-202ENST00000421459 MYO5AQ9Y4I1 1855 aaKnown RBP9.86□□□□□ -0.83
VIM-202ENST00000421459 MAST2Q6P0Q8 1798 aa9.86□□□□□ -0.83
VIM-202ENST00000421459 MAGEB6P1A0A0J9YX57 407 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 SLC15A5A6NIM6 579 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 GOLIM4O00461 696 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 PRKAB2O43741 272 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 PDE6AP16499 860 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 USP14P54578 494 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 HNRNPUQ00839 825 aaKnown RBP eCLIP9.85□□□□□ -0.83
VIM-202ENST00000421459 ATP2B2Q01814 1243 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 GABPAQ06546 454 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 MAP3K12Q12852 859 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 LRIT3Q3SXY7 679 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 PRAMEF19Q5SWL8 479 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 GJC2Q5T442 439 aaPredicted RBP9.85□□□□□ -0.83
VIM-202ENST00000421459 SLC9C2Q5TAH2 1124 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 MFSD14CQ5VZR4 134 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 SAMD1Q6SPF0 538 aaPredicted RBP9.85□□□□□ -0.83
VIM-202ENST00000421459 TTC6Q86TZ1 520 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 SIAH1Q8IUQ4 282 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 LCORLQ8N3X6 602 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 GTF3C2Q8WUA4 911 aaPredicted RBP9.85□□□□□ -0.83
VIM-202ENST00000421459 FAM161BQ96MY7 647 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 DNAJC2Q99543 621 aaKnown RBP9.85□□□□□ -0.83
VIM-202ENST00000421459 MOV10L1Q9BXT6 1211 aaKnown RBP9.85□□□□□ -0.83
VIM-202ENST00000421459 EHD4Q9H223 541 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 CABP5Q9NP86 173 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 MTMR10Q9NXD2 777 aa9.85□□□□□ -0.83
VIM-202ENST00000421459 DDX20Q9UHI6 824 aaKnown RBP9.85□□□□□ -0.83
VIM-202ENST00000421459 ZNF532Q9HCE3 1301 aa9.84□□□□□ -0.83
VIM-202ENST00000421459 CYP2D7A0A087X1C5 515 aa9.84□□□□□ -0.83
VIM-202ENST00000421459 TCRBV5S4A2TA0A5A2 114 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms