RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 SLC12A7Q9Y666 1083 aa11.35□□□□□ -0.59
RIF1-202ENST00000414861 BAZ2BQ9UIF8 2168 aaKnown RBP11.35□□□□□ -0.59
RIF1-202ENST00000414861 CCDC69A6NI79 296 aa11.35□□□□□ -0.59
RIF1-202ENST00000414861 GUCY1A2P33402 732 aa11.35□□□□□ -0.59
RIF1-202ENST00000414861 MAP3K10Q02779 954 aa11.35□□□□□ -0.59
RIF1-202ENST00000414861 RASGRP2Q7LDG7 609 aa11.35□□□□□ -0.59
RIF1-202ENST00000414861 ZNF654Q8IZM8 581 aa11.35□□□□□ -0.59
RIF1-202ENST00000414861 DCAF8L1A6NGE4 600 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 GH2P01242 217 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 NOVP48745 357 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 DCPSQ96C86 337 aaKnown RBP11.34□□□□□ -0.59
RIF1-202ENST00000414861 CCDC17Q96LX7 622 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 MTMR4Q9NYA4 1195 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 TAOK2Q9UL54 1235 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 OTOFQ9HC10 1997 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 PAPPA2Q9BXP8 1791 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 DOCK1Q14185 1865 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 PHF20L1A8MW92 1017 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 ZBTB43O43298 467 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 PPFIA3O75145 1194 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 SEPT2Q15019 361 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 ABCB5Q2M3G0 1257 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 KRT26Q7Z3Y9 468 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 DGKHQ86XP1 1220 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 ZNF526Q8TF50 670 aaPredicted RBP11.34□□□□□ -0.59
RIF1-202ENST00000414861 ANKS1AQ92625 1134 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 TMEM47Q9BQJ4 181 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 FAM217BQ9NTX9 383 aaPredicted RBP11.34□□□□□ -0.59
RIF1-202ENST00000414861 PPP2R3BQ9Y5P8 575 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 NID2Q14112 1375 aa11.34□□□□□ -0.59
RIF1-202ENST00000414861 CTDNEP1O95476 244 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 CDC27P30260 824 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 METAP2P50579 478 aaKnown RBP eCLIP11.33□□□□□ -0.6
RIF1-202ENST00000414861 TROAPQ12815 778 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 SULF1Q8IWU6 871 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 TMTC2Q8N394 836 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 NUP133Q8WUM0 1156 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 INTS4Q96HW7 963 aaKnown RBP11.33□□□□□ -0.6
RIF1-202ENST00000414861 RRAGCQ9HB90 399 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 NMRK2Q9NPI5 230 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 GOLGA8AA7E2F4 631 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 JAK2O60674 1132 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 DDIT3P35638 169 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 TMEM179Q6ZVK1 233 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 LRRC47Q8N1G4 583 aaKnown RBP11.33□□□□□ -0.6
RIF1-202ENST00000414861 PNMA1Q8ND90 353 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 ZC3H15Q8WU90 426 aaKnown RBP11.33□□□□□ -0.6
RIF1-202ENST00000414861 CHMP4CQ96CF2 233 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 ZBTB21Q9ULJ3 1066 aa11.33□□□□□ -0.6
RIF1-202ENST00000414861 MYH6P13533 1939 aa11.32□□□□□ -0.6
RIF1-202ENST00000414861 ADD1P35611 737 aaKnown RBP11.32□□□□□ -0.6
RIF1-202ENST00000414861 RAB3GAP1Q15042 981 aa11.32□□□□□ -0.6
RIF1-202ENST00000414861 SIAH1Q8IUQ4 282 aa11.32□□□□□ -0.6
RIF1-202ENST00000414861 GLIS2Q9BZE0 524 aaPredicted RBP11.32□□□□□ -0.6
RIF1-202ENST00000414861 KAT14Q9H8E8 782 aa11.32□□□□□ -0.6
RIF1-202ENST00000414861 DDAH1O94760 285 aa11.32□□□□□ -0.6
RIF1-202ENST00000414861 TTLL1O95922 423 aa11.32□□□□□ -0.6
RIF1-202ENST00000414861 CAP2P40123 477 aa11.32□□□□□ -0.6
RIF1-202ENST00000414861 ICA1Q05084 483 aa11.32□□□□□ -0.6
RIF1-202ENST00000414861 CCDC178Q5BJE1 867 aa11.32□□□□□ -0.6
RIF1-202ENST00000414861 CATIPQ7Z7H3 387 aa11.32□□□□□ -0.6
RIF1-202ENST00000414861 CCDC84Q86UT8 332 aaPredicted RBP11.32□□□□□ -0.6
RIF1-202ENST00000414861 USP48Q86UV5 1035 aa11.32□□□□□ -0.6
RIF1-202ENST00000414861 PNMA8AQ86V59 439 aaPredicted RBP11.32□□□□□ -0.6
RIF1-202ENST00000414861 NSUN7Q8NE18 718 aaKnown RBP11.32□□□□□ -0.6
RIF1-202ENST00000414861 MTMR7Q9Y216 660 aa11.32□□□□□ -0.6
RIF1-202ENST00000414861 TOP1P11387 765 aaKnown RBP11.31□□□□□ -0.6
RIF1-202ENST00000414861 EEF2P13639 858 aaKnown RBP11.31□□□□□ -0.6
RIF1-202ENST00000414861 VEGFAP15692 232 aaPredicted RBP11.31□□□□□ -0.6
RIF1-202ENST00000414861 INPP5BP32019 993 aa11.31□□□□□ -0.6
RIF1-202ENST00000414861 ATP2B2Q01814 1243 aa11.31□□□□□ -0.6
RIF1-202ENST00000414861 CLIP2Q9UDT6 1046 aa11.31□□□□□ -0.6
RIF1-202ENST00000414861 PHIPQ8WWQ0 1821 aa11.31□□□□□ -0.6
RIF1-202ENST00000414861 RCAN1P53805 252 aa11.31□□□□□ -0.6
RIF1-202ENST00000414861 PRKG1Q13976 671 aa11.31□□□□□ -0.6
RIF1-202ENST00000414861 RTN1Q16799 776 aa11.31□□□□□ -0.6
RIF1-202ENST00000414861 DCAF15Q66K64 600 aa11.31□□□□□ -0.6
RIF1-202ENST00000414861 MAP1SQ66K74 1059 aaPredicted RBP11.31□□□□□ -0.6
RIF1-202ENST00000414861 SYNE3Q6ZMZ3 975 aa11.31□□□□□ -0.6
RIF1-202ENST00000414861 CMTR1Q8N1G2 835 aaKnown RBP11.31□□□□□ -0.6
RIF1-202ENST00000414861 FANCBQ8NB91 859 aa11.31□□□□□ -0.6
RIF1-202ENST00000414861 KANSL2Q9H9L4 492 aa11.31□□□□□ -0.6
RIF1-202ENST00000414861 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.31□□□□□ -0.6
RIF1-202ENST00000414861 PTPDC1A2A3K4 754 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 PLEKHA8P1O95397 391 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 GJB2P29033 226 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 PKP1Q13835 747 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 NTRK3Q16288 839 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 SMARCC2Q8TAQ2 1214 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 DDX11Q96FC9 970 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 CDCA5Q96FF9 252 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 WRNIP1Q96S55 665 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 ZNF341Q9BYN7 854 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 CABP5Q9NP86 173 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 SMC3Q9UQE7 1217 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 A0A1W2PRG0 241 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 ECE1P42892 770 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 FMR1Q06787 632 aaKnown RBP eCLIP11.3□□□□□ -0.64e-9■■□□□ 13.5
RIF1-202ENST00000414861 ACER1Q8TDN7 264 aa11.3□□□□□ -0.6
RIF1-202ENST00000414861 ZKSCAN4Q969J2 545 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms