RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 CCDC144CPQ8IYA2 1237 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 TRPM4Q8TD43 1214 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 CEP95Q96GE4 821 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.77□□□□□ -1.17
VPS41-204ENST00000413141 TRIM34Q9BYJ4 488 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 TMEM39BQ9GZU3 492 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 KAT14Q9H8E8 782 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 FAM217BQ9NTX9 383 aaPredicted RBP7.77□□□□□ -1.17
VPS41-204ENST00000413141 PGAP2Q9UHJ9 254 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 HERC5Q9UII4 1024 aaKnown RBP7.77□□□□□ -1.17
VPS41-204ENST00000413141 ZDHHC9Q9Y397 364 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 ASTN2O75129 1339 aaPredicted RBP7.77□□□□□ -1.17
VPS41-204ENST00000413141 STK36Q9NRP7 1315 aa7.77□□□□□ -1.17
VPS41-204ENST00000413141 SRCAPQ6ZRS2 3230 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 CPLX1O14810 134 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 STX6O43752 255 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 GRIN3BO60391 1043 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 DDNO94850 711 aaPredicted RBP7.76□□□□□ -1.17
VPS41-204ENST00000413141 CALM1P0DP23 149 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 CALM2P0DP24 149 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 CALM3P0DP25 149 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 PDCP20941 246 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 SYT1P21579 422 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 ADD1P35611 737 aaKnown RBP7.76□□□□□ -1.17
VPS41-204ENST00000413141 TNNI2P48788 182 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 NTRK3Q16288 839 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 RBM26Q5T8P6 1007 aaKnown RBP7.76□□□□□ -1.17
VPS41-204ENST00000413141 FOXP4Q8IVH2 680 aaPredicted RBP7.76□□□□□ -1.17
VPS41-204ENST00000413141 CDAN1Q8IWY9 1227 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 PNMA1Q8ND90 353 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 NUP133Q8WUM0 1156 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 TNPO1Q92973 898 aaKnown RBP7.76□□□□□ -1.17
VPS41-204ENST00000413141 DDX11Q96FC9 970 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 CCDC17Q96LX7 622 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 RBM28Q9NW13 759 aaKnown RBP7.76□□□□□ -1.17
VPS41-204ENST00000413141 HACL1Q9UJ83 578 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 STX8Q9UNK0 236 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 KIF3AQ9Y496 699 aa7.76□□□□□ -1.17
VPS41-204ENST00000413141 WDR33Q9C0J8 1336 aaKnown RBP7.76□□□□□ -1.17
VPS41-204ENST00000413141 CCDC196A0A1B0GTZ2 297 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 PPFIA3O75145 1194 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 ZSCAN22P10073 491 aaPredicted RBP7.75□□□□□ -1.17
VPS41-204ENST00000413141 PDIA4P13667 645 aaKnown RBP7.75□□□□□ -1.17
VPS41-204ENST00000413141 FDPSP14324 419 aaKnown RBP7.75□□□□□ -1.17
VPS41-204ENST00000413141 IFNAR1P17181 557 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 LMOD1P29536 600 aaPredicted RBP7.75□□□□□ -1.17
VPS41-204ENST00000413141 EPS15P42566 896 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 RASA3Q14644 834 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 PPP2R5BQ15173 497 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 SHROOM1Q2M3G4 852 aaPredicted RBP7.75□□□□□ -1.17
VPS41-204ENST00000413141 CERKLQ49MI3 558 aaPredicted RBP7.75□□□□□ -1.17
VPS41-204ENST00000413141 ANGEL2Q5VTE6 544 aaKnown RBP7.75□□□□□ -1.17
VPS41-204ENST00000413141 CPLX2Q6PUV4 134 aaKnown RBP7.75□□□□□ -1.17
VPS41-204ENST00000413141 TMTC3Q6ZXV5 915 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 CDC37L1Q7L3B6 337 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 CLEC10AQ8IUN9 316 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 APOBEC3FQ8IUX4 373 aaKnown RBP7.75□□□□□ -1.17
VPS41-204ENST00000413141 FAM184AQ8NB25 1140 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 FANCBQ8NB91 859 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 CTCFLQ8NI51 663 aaPredicted RBP7.75□□□□□ -1.17
VPS41-204ENST00000413141 L3MBTL3Q96JM7 780 aaPredicted RBP7.75□□□□□ -1.17
VPS41-204ENST00000413141 TEPSINQ96N21 525 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 MAP3K14Q99558 947 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 TMEM47Q9BQJ4 181 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 MTMR4Q9NYA4 1195 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 GGA3Q9NZ52 723 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 MTMR6Q9Y217 621 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 SSC5DA1L4H1 1573 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 CNTNAP5Q8WYK1 1306 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 WDR90Q96KV7 1748 aa7.75□□□□□ -1.17
VPS41-204ENST00000413141 PAPPA2Q9BXP8 1791 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 MYH4Q9Y623 1939 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 ATAD5Q96QE3 1844 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 VPS37CA5D8V6 355 aaPredicted RBP7.74□□□□□ -1.17
VPS41-204ENST00000413141 MPHOSPH10O00566 681 aaKnown RBP7.74□□□□□ -1.17
VPS41-204ENST00000413141 TBC1D12O60347 775 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 GDF11O95390 407 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 PLEKHA8P1O95397 391 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 FMNL1O95466 1100 aaPredicted RBP7.74□□□□□ -1.17
VPS41-204ENST00000413141 TTLL1O95922 423 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 F13A1P00488 732 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 TOP1P11387 765 aaKnown RBP7.74□□□□□ -1.17
VPS41-204ENST00000413141 HIRAP54198 1017 aaPredicted RBP7.74□□□□□ -1.17
VPS41-204ENST00000413141 FUT2Q10981 343 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 RRP1BQ14684 758 aaKnown RBP7.74□□□□□ -1.17
VPS41-204ENST00000413141 GRM4Q14833 912 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 ABCB5Q2M3G0 1257 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 PPP4R3BQ5MIZ7 849 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 LARP1BQ659C4 914 aaKnown RBP7.74□□□□□ -1.17
VPS41-204ENST00000413141 CLEC17AQ6ZS10 378 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 TMEM179Q6ZVK1 233 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 RASGRP2Q7LDG7 609 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 NBPF11Q86T75 865 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 LRRC47Q8N1G4 583 aaKnown RBP7.74□□□□□ -1.17
VPS41-204ENST00000413141 PHKBQ93100 1093 aa7.74□□□□□ -1.17
VPS41-204ENST00000413141 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.74□□□□□ -1.17
VPS41-204ENST00000413141 ADARB2Q9NS39 739 aaKnown RBP7.74□□□□□ -1.17
VPS41-204ENST00000413141 ORC3Q9UBD5 711 aaPredicted RBP7.74□□□□□ -1.17
VPS41-204ENST00000413141 SCAF8Q9UPN6 1271 aaKnown RBP7.74□□□□□ -1.17
VPS41-204ENST00000413141 PPP2R3BQ9Y5P8 575 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms