RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 OAS2P29728 719 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 AARSP49588 968 aaKnown RBP eCLIP6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 HNRNPH2P55795 449 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 CTSWP56202 376 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 CHMP4BP1P59074 171 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 IRX5P78411 483 aaPredicted RBP6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 SART3Q15020 963 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 LONRF2Q1L5Z9 754 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 TMEM67Q5HYA8 995 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 SLC9C2Q5TAH2 1124 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 TOGARAM2Q6ZUX3 1019 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 PLCD3Q8N3E9 789 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 LPIN2Q92539 896 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 ANKZF1Q9H8Y5 726 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 WWC3Q9ULE0 1092 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 NAP1L2Q9ULW6 460 aaPredicted RBP6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 L1RE1Q9UN81 338 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 ZNF532Q9HCE3 1301 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 ANKRD18BA2A2Z9 1011 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 B4E1Z4 1266 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 KIF5CO60282 957 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 MYL1P05976 194 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 DPYDQ12882 1025 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 GNL2Q13823 731 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 PUM3Q15397 648 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 FILIP1LQ4L180 1135 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 KIF6Q6ZMV9 814 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 DIS3L2Q8IYB7 885 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 IFNL3Q8IZI9 196 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 DHX58Q96C10 678 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 CLIC6Q96NY7 704 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 ST7Q9NRC1 585 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 GJB4Q9NTQ9 266 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 ZSWIM5Q9P217 1185 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 SYNRGQ9UMZ2 1314 aa6.52□□□□□ -1.37
CCDC88A-203ENST00000412148 BAZ2AQ9UIF9 1905 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 TARSL2A2RTX5 802 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 PRPF3O43395 683 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 XBP1P17861 261 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 ZC3H6P61129 1189 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 AMPD2Q01433 879 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 SEC23AQ15436 765 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 RTN1Q16799 776 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 FAM71BQ8TC56 605 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 TNFRSF25Q93038 417 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 IQCDQ96DY2 449 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 AIFM3Q96NN9 605 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 PHF20Q9BVI0 1012 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 ACBD3Q9H3P7 528 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 PIH1D3Q9NQM4 214 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 RBM28Q9NW13 759 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 SERTAD1Q9UHV2 236 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 RWDD2AQ9UIY3 292 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 SLIT2O94813 1529 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 A0A1W2PQC6 194 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 PPP1R3GB7ZBB8 358 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 POLR2DO15514 142 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 PDE8AO60658 829 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 A1BGP04217 495 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 CALM1P0DP23 149 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 CALM2P0DP24 149 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 CALM3P0DP25 149 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 ITIH3Q06033 890 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 FUT2Q10981 343 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 MAP3K12Q12852 859 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 METTL24Q5JXM2 366 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 NLRP10Q86W26 655 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 PROSER2Q86WR7 435 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 MRPL44Q9H9J2 332 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 EPB41L4AQ9HCS5 686 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 MKRN1Q9UHC7 482 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 ADAM21Q9UKJ8 722 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 DOT1LQ8TEK3 1739 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 PDS5AQ29RF7 1337 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 CTAGE9A4FU28 777 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 GSG1L2A8MUP6 293 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 BTBD18B2RXH4 712 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 PSMD14O00487 310 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 PRR29P0C7W0 189 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 ACTN2P35609 894 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 E2F4Q16254 413 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 ARL6IP4Q66PJ3 421 aaKnown RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 CTR9Q6PD62 1173 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 RAD9BQ6WBX8 426 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 MFSD6Q6ZSS7 791 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 ZNF572Q7Z3I7 529 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 PPFIBP1Q86W92 1011 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 FANCBQ8NB91 859 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 CTCFLQ8NI51 663 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 CCDC12Q8WUD4 166 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 PHKBQ93100 1093 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 SLC26A6Q9BXS9 759 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 NACAP1Q9BZK3 213 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 RMND1Q9NWS8 449 aa6.51□□□□□ -1.37
CCDC88A-203ENST00000412148 COL24A1Q17RW2 1714 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 TRIM75PA6NK02 468 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 IFIT3O14879 490 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 CSB-PGBD3P0DP91 1061 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 SLC5A1P13866 664 aa6.5□□□□□ -1.37
CCDC88A-203ENST00000412148 IL2RBP14784 551 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms