RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 MAST3O60307 1309 aa11.1□□□□□ -0.63
VPS53-203ENST00000401468 TCRBV5S4A2TA0A5A2 114 aa11.1□□□□□ -0.63
VPS53-203ENST00000401468 GOLIM4O00461 696 aa11.1□□□□□ -0.63
VPS53-203ENST00000401468 ZBTB48P10074 688 aaPredicted RBP11.1□□□□□ -0.63
VPS53-203ENST00000401468 RGS3P49796 1198 aa11.1□□□□□ -0.63
VPS53-203ENST00000401468 SLC4A8Q2Y0W8 1093 aa11.1□□□□□ -0.63
VPS53-203ENST00000401468 DZIP1Q86YF9 867 aaKnown RBP11.1□□□□□ -0.63
VPS53-203ENST00000401468 ARHGAP39Q9C0H5 1083 aa11.1□□□□□ -0.63
VPS53-203ENST00000401468 DDX4Q9NQI0 724 aaKnown RBP11.1□□□□□ -0.63
VPS53-203ENST00000401468 TRIM17Q9Y577 477 aa11.1□□□□□ -0.63
VPS53-203ENST00000401468 LAMA4Q16363 1823 aa11.09□□□□□ -0.63
VPS53-203ENST00000401468 IRF6O14896 467 aa11.09□□□□□ -0.63
VPS53-203ENST00000401468 SDSP20132 328 aa11.09□□□□□ -0.63
VPS53-203ENST00000401468 ADD2P35612 726 aa11.09□□□□□ -0.63
VPS53-203ENST00000401468 BTDP43251 543 aa11.09□□□□□ -0.63
VPS53-203ENST00000401468 MECOMQ03112 1051 aa11.09□□□□□ -0.63
VPS53-203ENST00000401468 UBE3CQ15386 1083 aa11.09□□□□□ -0.63
VPS53-203ENST00000401468 TAF1CQ15572 869 aaPredicted RBP11.09□□□□□ -0.63
VPS53-203ENST00000401468 HHIPL2Q6UWX4 724 aa11.09□□□□□ -0.63
VPS53-203ENST00000401468 ERICH6Q7L0X2 663 aa11.09□□□□□ -0.63
VPS53-203ENST00000401468 SH3BP5LQ7L8J4 393 aa11.09□□□□□ -0.63
VPS53-203ENST00000401468 ZSCAN29Q8IWY8 852 aaPredicted RBP11.09□□□□□ -0.63
VPS53-203ENST00000401468 DNAJC2Q99543 621 aaKnown RBP11.09□□□□□ -0.63
VPS53-203ENST00000401468 TSHZ2Q9NRE2 1034 aa11.09□□□□□ -0.63
VPS53-203ENST00000401468 A0A0C4DFX4 3053 aa11.09□□□□□ -0.63
VPS53-203ENST00000401468 LOC285556D6RIA3 1793 aa11.08□□□□□ -0.64
VPS53-203ENST00000401468 DDTLA6NHG4 134 aaPredicted RBP11.08□□□□□ -0.64
VPS53-203ENST00000401468 ZFYP08048 801 aaPredicted RBP11.08□□□□□ -0.64
VPS53-203ENST00000401468 MAP3K12Q12852 859 aa11.08□□□□□ -0.64
VPS53-203ENST00000401468 OTOP1Q7RTM1 612 aa11.08□□□□□ -0.64
VPS53-203ENST00000401468 RAI14Q9P0K7 980 aa11.08□□□□□ -0.64
VPS53-203ENST00000401468 MROH7-TTC4A0A0A0MT08 1334 aa11.08□□□□□ -0.64
VPS53-203ENST00000401468 SZT2Q5T011 3432 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 GPR75-ASB3A0A0A6YYF3 556 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 BTBD19C9JJ37 291 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 MAP4K4O95819 1239 aaPredicted RBP11.07□□□□□ -0.64
VPS53-203ENST00000401468 PDE6AP16499 860 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 FXR1P51114 621 aaKnown RBP eCLIP11.07□□□□□ -0.64
VPS53-203ENST00000401468 PRSS12P56730 875 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 PPP4CP60510 307 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 GSTO1P78417 241 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 ZSCAN25Q6NSZ9 544 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 FAM83AQ86UY5 434 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 FAM151AQ8WW52 585 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 LRCH3Q96II8 777 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 ZNF341Q9BYN7 854 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.07□□□□□ -0.643e-7■■■■□ 22.8
VPS53-203ENST00000401468 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.07□□□□□ -0.64
VPS53-203ENST00000401468 LRP2BPQ9P2M1 347 aa11.07□□□□□ -0.64
VPS53-203ENST00000401468 SPDYE5A6NIY4 337 aa11.06□□□□□ -0.64
VPS53-203ENST00000401468 RNF113AO15541 343 aaKnown RBP11.06□□□□□ -0.64
VPS53-203ENST00000401468 WDHD1O75717 1129 aaPredicted RBP11.06□□□□□ -0.64
VPS53-203ENST00000401468 IDH1O75874 414 aaKnown RBP11.06□□□□□ -0.64
VPS53-203ENST00000401468 OSBPP22059 807 aa11.06□□□□□ -0.64
VPS53-203ENST00000401468 SHROOM1Q2M3G4 852 aaPredicted RBP11.06□□□□□ -0.64
VPS53-203ENST00000401468 LRRFIP1Q32MZ4 808 aaKnown RBP11.06□□□□□ -0.64
VPS53-203ENST00000401468 ZMYM1Q5SVZ6 1142 aa11.06□□□□□ -0.64
VPS53-203ENST00000401468 SLC9C2Q5TAH2 1124 aa11.06□□□□□ -0.64
VPS53-203ENST00000401468 NAA16Q6N069 864 aaPredicted RBP11.06□□□□□ -0.64
VPS53-203ENST00000401468 ADGRA1Q86SQ6 560 aa11.06□□□□□ -0.64
VPS53-203ENST00000401468 CERS3Q8IU89 383 aa11.06□□□□□ -0.64
VPS53-203ENST00000401468 SLF2Q8IX21 1173 aa11.06□□□□□ -0.64
VPS53-203ENST00000401468 CPA4Q9UI42 421 aa11.06□□□□□ -0.64
VPS53-203ENST00000401468 PLXNB2O15031 1838 aa11.06□□□□□ -0.64
VPS53-203ENST00000401468 COL2A1P02458 1487 aaPredicted RBP11.06□□□□□ -0.64
VPS53-203ENST00000401468 ALPK3Q96L96 1907 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 RPAP1Q9BWH6 1393 aaPredicted RBP11.05□□□□□ -0.64
VPS53-203ENST00000401468 CHGBP05060 677 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 LDHCP07864 332 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 GTF2A2P52657 109 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 FKBP1CQ5VVH2 108 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 DCAF15Q66K64 600 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 FBXO46Q6PJ61 603 aaPredicted RBP11.05□□□□□ -0.64
VPS53-203ENST00000401468 NYAP1Q6ZVC0 841 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 ERO1BQ86YB8 467 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 MAGEB6Q8N7X4 407 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 SH3RF3Q8TEJ3 882 aaPredicted RBP11.05□□□□□ -0.64
VPS53-203ENST00000401468 APPBP2Q92624 585 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 RIOK1Q9BRS2 568 aaKnown RBP11.05□□□□□ -0.64
VPS53-203ENST00000401468 FSD1Q9BTV5 496 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 CDHR5Q9HBB8 845 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 ZNF532Q9HCE3 1301 aa11.05□□□□□ -0.64
VPS53-203ENST00000401468 COL11A1P12107 1806 aaPredicted RBP11.05□□□□□ -0.64
VPS53-203ENST00000401468 ATRNL1Q5VV63 1379 aa11.04□□□□□ -0.64
VPS53-203ENST00000401468 ZNFX1Q9P2E3 1918 aaKnown RBP11.04□□□□□ -0.64
VPS53-203ENST00000401468 TESPA1A2RU30 521 aaPredicted RBP11.04□□□□□ -0.64
VPS53-203ENST00000401468 SMAPO00193 183 aa11.04□□□□□ -0.64
VPS53-203ENST00000401468 HIP1O00291 1037 aa11.04□□□□□ -0.64
VPS53-203ENST00000401468 ALDH1A1P00352 501 aa11.04□□□□□ -0.64
VPS53-203ENST00000401468 CHMLP26374 656 aa11.04□□□□□ -0.64
VPS53-203ENST00000401468 CTGFP29279 349 aa11.04□□□□□ -0.64
VPS53-203ENST00000401468 RHBDL3P58872 404 aa11.04□□□□□ -0.64
VPS53-203ENST00000401468 SP3Q02447 781 aa11.04□□□□□ -0.64
VPS53-203ENST00000401468 OTUD7BQ6GQQ9 843 aa11.04□□□□□ -0.64
VPS53-203ENST00000401468 GADL1Q6ZQY3 521 aa11.04□□□□□ -0.64
VPS53-203ENST00000401468 OSBP2Q969R2 916 aa11.04□□□□□ -0.64
VPS53-203ENST00000401468 HELLSQ9NRZ9 838 aa11.04□□□□□ -0.64
VPS53-203ENST00000401468 AATFQ9NY61 560 aaKnown RBP eCLIP11.04□□□□□ -0.64
VPS53-203ENST00000401468 SAP30BPQ9UHR5 308 aaKnown RBP11.04□□□□□ -0.64
VPS53-203ENST00000401468 PTCH2Q9Y6C5 1203 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms