RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 CCDC174Q6PII3 467 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 MIGA2Q7L4E1 593 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 CKAP2LQ8IYA6 745 aa9.42□□□□□ -0.9
PTPRD-204ENST00000397606 RNF26Q9BY78 433 aaPredicted RBP9.42□□□□□ -0.9
PTPRD-204ENST00000397606 MRPL11Q9Y3B7 192 aaKnown RBP9.42□□□□□ -0.9
PTPRD-204ENST00000397606 SMCO2A6NFE2 343 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 TBCAO75347 108 aaKnown RBP9.41□□□□□ -0.9
PTPRD-204ENST00000397606 FLOT1O75955 427 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 CFBP00751 764 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 GOLGA8HP0CJ92 632 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 HDLBPQ00341 1268 aaKnown RBP9.41□□□□□ -0.9
PTPRD-204ENST00000397606 KIF4BQ2VIQ3 1234 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 ANO1Q5XXA6 986 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 AGBL3Q8NEM8 1001 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 SERPINA10Q9UK55 444 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 WDR19Q8NEZ3 1342 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 hCG_1642624A0A1W2PR95 340 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 MATR3P43243 847 aaKnown RBP eCLIP9.41□□□□□ -0.9
PTPRD-204ENST00000397606 CTR9Q6PD62 1173 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 FBXO11Q86XK2 927 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 LTBP4Q8N2S1 1624 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 MYCNP04198 464 aaPredicted RBP9.41□□□□□ -0.9
PTPRD-204ENST00000397606 SCRN1Q12765 414 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 ZNF174Q15697 407 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 TTC38Q5R3I4 469 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 KLHL10Q6JEL2 608 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 GADL1Q6ZQY3 521 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 LRP10Q7Z4F1 713 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 PODXL2Q9NZ53 605 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 HERC5Q9UII4 1024 aaKnown RBP9.41□□□□□ -0.9
PTPRD-204ENST00000397606 CNOT7Q9UIV1 285 aaKnown RBP9.41□□□□□ -0.9
PTPRD-204ENST00000397606 KCNJ14Q9UNX9 436 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 CYP2D6P10635 497 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 BMP3P12645 472 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 LMNB1P20700 586 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 RRAGBQ5VZM2 374 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 MICALL2Q8IY33 904 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 UBA5Q9GZZ9 404 aa9.41□□□□□ -0.9
PTPRD-204ENST00000397606 CMTR1Q8N1G2 835 aaKnown RBP9.4□□□□□ -0.9
PTPRD-204ENST00000397606 AMNQ9BXJ7 453 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 ZNF341Q9BYN7 854 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 ALS2Q96Q42 1657 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 STRCQ7RTU9 1775 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 PSMD14O00487 310 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 STX1AQ16623 288 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 TRMT1LQ7Z2T5 733 aaKnown RBP9.4□□□□□ -0.9
PTPRD-204ENST00000397606 MCF2L2Q86YR7 1114 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 TBC1D10CQ8IV04 446 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 IQUBQ8NA54 791 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 PSTPIP2Q9H939 334 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 ENTPD3O75355 529 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 MMP14P50281 582 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 PPFIBP1Q86W92 1011 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 ZNF526Q8TF50 670 aaPredicted RBP9.4□□□□□ -0.9
PTPRD-204ENST00000397606 VPS33BQ9H267 617 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 HOMER2Q9NSB8 354 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 ZNHIT6Q9NWK9 470 aaKnown RBP9.4□□□□□ -0.9
PTPRD-204ENST00000397606 DACT1Q9NYF0 836 aa9.4□□□□□ -0.9
PTPRD-204ENST00000397606 hCG_1984214I3L0E3 225 aa9.4□□□□□ -0.91
PTPRD-204ENST00000397606 CCNT1O60563 726 aaKnown RBP9.4□□□□□ -0.91
PTPRD-204ENST00000397606 GH2P01242 217 aa9.4□□□□□ -0.91
PTPRD-204ENST00000397606 KLRK1P26718 216 aa9.4□□□□□ -0.91
PTPRD-204ENST00000397606 BLIDQ8IZY5 108 aa9.4□□□□□ -0.91
PTPRD-204ENST00000397606 ZNF713Q8N859 430 aaPredicted RBP9.4□□□□□ -0.91
PTPRD-204ENST00000397606 IFNAR1P17181 557 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 TSGA10IPQ3SY00 556 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 CDC37L1Q7L3B6 337 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 SPICE1Q8N0Z3 855 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 GTPBP4Q9BZE4 634 aaKnown RBP9.39□□□□□ -0.91
PTPRD-204ENST00000397606 GRPEL1Q9HAV7 217 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 EXOC1Q9NV70 894 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 PCDHA1Q9Y5I3 950 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 STK24Q9Y6E0 443 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 VWA3AA6NCI4 1184 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 ORC4O43929 436 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 PLCD1P51178 756 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 SBK1Q52WX2 424 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 C12orf60Q5U649 245 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 BEGAINQ9BUH8 593 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 ZBTB12Q9Y330 459 aaPredicted RBP9.39□□□□□ -0.91
PTPRD-204ENST00000397606 GPR75-ASB3A0A0A6YYF3 556 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 BRD1O95696 1058 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 ALAS1P13196 640 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 AKT1S1Q96B36 256 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 DHX58Q96C10 678 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 OSBPL5Q9H0X9 879 aaPredicted RBP9.39□□□□□ -0.91
PTPRD-204ENST00000397606 PDS5AQ29RF7 1337 aaKnown RBP9.39□□□□□ -0.91
PTPRD-204ENST00000397606 FMNL1O95466 1100 aaPredicted RBP9.39□□□□□ -0.91
PTPRD-204ENST00000397606 HAUS3Q68CZ6 603 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 FAM160B2Q86V87 743 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 NOSTRINQ8IVI9 506 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 FBXO18Q8NFZ0 1043 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 SLC5A4Q9NY91 659 aa9.39□□□□□ -0.91
PTPRD-204ENST00000397606 GCOM1H8Y6P7 765 aaPredicted RBP9.38□□□□□ -0.91
PTPRD-204ENST00000397606 BIN1O00499 593 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 FOSP01100 380 aaPredicted RBP9.38□□□□□ -0.91
PTPRD-204ENST00000397606 POLR2MP0CAP2 368 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 IL1R1P14778 569 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 AFMP43652 599 aa9.38□□□□□ -0.91
PTPRD-204ENST00000397606 RCAN1P53805 252 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms