RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SRPRBQ9Y5M8 271 aaKnown RBP15.37■□□□□ 0.05
CCDC3-202ENST00000378839 CNTNAP5Q8WYK1 1306 aa15.37■□□□□ 0.05
CCDC3-202ENST00000378839 IKBKBO14920 756 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 FMR1Q06787 632 aaKnown RBP eCLIP15.36■□□□□ 0.05
CCDC3-202ENST00000378839 TMTC3Q6ZXV5 915 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 TMC6Q7Z403 805 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 PDILTQ8N807 584 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 EPSTI1Q96J88 318 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 INTS13Q9NVM9 706 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 TMEM232C9JQI7 657 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 LAMB1P07942 1786 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 TNNT1P13805 278 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 ZRSR1Q15695 479 aaKnown RBP15.36■□□□□ 0.05
CCDC3-202ENST00000378839 PDS5AQ29RF7 1337 aaKnown RBP15.36■□□□□ 0.05
CCDC3-202ENST00000378839 HSP90AA4PQ58FG1 418 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 CATIPQ7Z7H3 387 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 FANCLQ9NW38 375 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 TRMT1Q9NXH9 659 aaKnown RBP15.36■□□□□ 0.05
CCDC3-202ENST00000378839 BAZ2BQ9UIF8 2168 aaKnown RBP15.36■□□□□ 0.05
CCDC3-202ENST00000378839 ORC4O43929 436 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 SARSP49591 514 aaKnown RBP15.36■□□□□ 0.05
CCDC3-202ENST00000378839 DYNLL2Q96FJ2 89 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 ANKRD2Q9GZV1 360 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 IL17RBQ9NRM6 502 aa15.36■□□□□ 0.05
CCDC3-202ENST00000378839 IGSF3O75054 1194 aa15.35■□□□□ 0.05
CCDC3-202ENST00000378839 CASP1P29466 404 aa15.35■□□□□ 0.05
CCDC3-202ENST00000378839 GOLGA8FQ08AF8 430 aa15.35■□□□□ 0.05
CCDC3-202ENST00000378839 GOLGA8DPQ0D2H9 430 aa15.35■□□□□ 0.05
CCDC3-202ENST00000378839 DIXDC1Q155Q3 683 aa15.35■□□□□ 0.05
CCDC3-202ENST00000378839 TPD52L1Q16890 204 aaPredicted RBP15.35■□□□□ 0.05
CCDC3-202ENST00000378839 NYAP1Q6ZVC0 841 aa15.35■□□□□ 0.05
CCDC3-202ENST00000378839 USP21Q9UK80 565 aa15.35■□□□□ 0.05
CCDC3-202ENST00000378839 NAA30Q147X3 362 aaPredicted RBP15.34■□□□□ 0.05
CCDC3-202ENST00000378839 POSTNQ15063 836 aa15.34■□□□□ 0.05
CCDC3-202ENST00000378839 SLC35G1Q2M3R5 365 aa15.34■□□□□ 0.05
CCDC3-202ENST00000378839 MEX3CQ5U5Q3 659 aaKnown RBP15.34■□□□□ 0.05
CCDC3-202ENST00000378839 E4F1Q66K89 784 aaPredicted RBP15.34■□□□□ 0.05
CCDC3-202ENST00000378839 IQCA1Q86XH1 822 aa15.34■□□□□ 0.05
CCDC3-202ENST00000378839 SH3RF3Q8TEJ3 882 aaPredicted RBP15.34■□□□□ 0.05
CCDC3-202ENST00000378839 NT5DC1Q5TFE4 455 aa15.34■□□□□ 0.05
CCDC3-202ENST00000378839 ZNF579Q8NAF0 562 aaKnown RBP15.34■□□□□ 0.05
CCDC3-202ENST00000378839 CRNKL1Q9BZJ0 848 aaKnown RBP15.34■□□□□ 0.05
CCDC3-202ENST00000378839 LY75O60449 1722 aa15.34■□□□□ 0.05
CCDC3-202ENST00000378839 SMTNL1A8MU46 457 aa15.34■□□□□ 0.05
CCDC3-202ENST00000378839 CTIFO43310 598 aaKnown RBP15.34■□□□□ 0.05
CCDC3-202ENST00000378839 KRT2P35908 639 aa15.34■□□□□ 0.05
CCDC3-202ENST00000378839 MYL5Q02045 173 aa15.34■□□□□ 0.05
CCDC3-202ENST00000378839 FAM196AQ6ZSG2 479 aa15.34■□□□□ 0.05
CCDC3-202ENST00000378839 CCAR2Q8N163 923 aaKnown RBP15.34■□□□□ 0.05
CCDC3-202ENST00000378839 ATP8A2Q9NTI2 1148 aa15.34■□□□□ 0.05
CCDC3-202ENST00000378839 MAST2Q6P0Q8 1798 aa15.33■□□□□ 0.05
CCDC3-202ENST00000378839 ZNF174Q15697 407 aa15.33■□□□□ 0.04
CCDC3-202ENST00000378839 IL17AQ16552 155 aa15.33■□□□□ 0.04
CCDC3-202ENST00000378839 SBK1Q52WX2 424 aa15.33■□□□□ 0.04
CCDC3-202ENST00000378839 MCM9Q9NXL9 1143 aa15.33■□□□□ 0.04
CCDC3-202ENST00000378839 DDAH1O94760 285 aa15.33■□□□□ 0.04
CCDC3-202ENST00000378839 TRMT44Q8IYL2 757 aaKnown RBP15.33■□□□□ 0.04
CCDC3-202ENST00000378839 IMPACTQ9P2X3 320 aa15.33■□□□□ 0.04
CCDC3-202ENST00000378839 NEMFO60524 1076 aa15.32■□□□□ 0.04
CCDC3-202ENST00000378839 MORC3Q14149 939 aa15.32■□□□□ 0.04
CCDC3-202ENST00000378839 PPP2R5BQ15173 497 aa15.32■□□□□ 0.04
CCDC3-202ENST00000378839 RASGRP2Q7LDG7 609 aa15.32■□□□□ 0.04
CCDC3-202ENST00000378839 ELOA2Q8IYF1 753 aaPredicted RBP15.32■□□□□ 0.04
CCDC3-202ENST00000378839 STAG2Q8N3U4 1231 aa15.32■□□□□ 0.04
CCDC3-202ENST00000378839 SLC44A5Q8NCS7 719 aa15.32■□□□□ 0.04
CCDC3-202ENST00000378839 MAPK8IP2Q13387 824 aaPredicted RBP15.32■□□□□ 0.04
CCDC3-202ENST00000378839 SPATA20Q8TB22 786 aa15.32■□□□□ 0.04
CCDC3-202ENST00000378839 RBM28Q9NW13 759 aaKnown RBP15.32■□□□□ 0.04
CCDC3-202ENST00000378839 ANKIB1Q9P2G1 1089 aa15.32■□□□□ 0.04
CCDC3-202ENST00000378839 TRIM75PA6NK02 468 aa15.32■□□□□ 0.04
CCDC3-202ENST00000378839 AKAP17AQ02040 695 aaKnown RBP15.32■□□□□ 0.04
CCDC3-202ENST00000378839 C12orf60Q5U649 245 aa15.32■□□□□ 0.04
CCDC3-202ENST00000378839 CCDC88AQ3V6T2 1871 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 USP17L3A6NCW0 530 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 USP17L4A6NCW7 530 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 PCP11498 1178 aaKnown RBP15.31■□□□□ 0.04
CCDC3-202ENST00000378839 RFC4P35249 363 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 PLCD1P51178 756 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 GRAPQ13588 217 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 TYW1BQ6NUM6 668 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 USP17L1Q7RTZ2 530 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 GRAPLQ8TC17 118 aaPredicted RBP15.31■□□□□ 0.04
CCDC3-202ENST00000378839 SYMPKQ92797 1274 aaKnown RBP15.31■□□□□ 0.04
CCDC3-202ENST00000378839 ARPP21Q9UBL0 812 aaPredicted RBP15.31■□□□□ 0.04
CCDC3-202ENST00000378839 PRDM4Q9UKN5 801 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 UBASH3AP57075 661 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 GPSM2P81274 684 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 TRAPPC3LQ5T215 181 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 CEP135Q66GS9 1140 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 DZIP1Q86YF9 867 aaKnown RBP15.31■□□□□ 0.04
CCDC3-202ENST00000378839 DHX58Q96C10 678 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 KCND1Q9NSA2 647 aa15.31■□□□□ 0.04
CCDC3-202ENST00000378839 GOLGB1Q14789 3259 aaKnown RBP15.31■□□□□ 0.04
CCDC3-202ENST00000378839 CD44P16070 742 aaKnown RBP15.3■□□□□ 0.04
CCDC3-202ENST00000378839 GSDMDP57764 484 aa15.3■□□□□ 0.04
CCDC3-202ENST00000378839 TFAP4Q01664 338 aa15.3■□□□□ 0.04
CCDC3-202ENST00000378839 PRR5LQ6MZQ0 368 aa15.3■□□□□ 0.04
CCDC3-202ENST00000378839 ZNF592Q92610 1267 aa15.3■□□□□ 0.04
CCDC3-202ENST00000378839 FAM205AQ6ZU69 1335 aa15.3■□□□□ 0.04
CCDC3-202ENST00000378839 TSPY2A6NKD2 308 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms