RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 CLCN2P51788 898 aa5.5□□□□□ -1.53
PCDH9-201ENST00000377861 TCIRG1Q13488 830 aa5.5□□□□□ -1.53
PCDH9-201ENST00000377861 POSTNQ15063 836 aa5.5□□□□□ -1.53
PCDH9-201ENST00000377861 SLC52A2Q9HAB3 445 aa5.5□□□□□ -1.53
PCDH9-201ENST00000377861 EPN1Q9Y6I3 576 aaPredicted RBP5.5□□□□□ -1.53
PCDH9-201ENST00000377861 FRMD8P1Q9BZ68 369 aaPredicted RBP5.5□□□□□ -1.53
PCDH9-201ENST00000377861 KDM3AQ9Y4C1 1321 aa5.5□□□□□ -1.53
PCDH9-201ENST00000377861 TAF5LO75529 589 aa5.5□□□□□ -1.53
PCDH9-201ENST00000377861 PDIA3P30101 505 aaKnown RBP5.5□□□□□ -1.53
PCDH9-201ENST00000377861 CDC42EP1Q00587 391 aa5.5□□□□□ -1.53
PCDH9-201ENST00000377861 ATP2A3Q93084 1043 aa5.5□□□□□ -1.53
PCDH9-201ENST00000377861 ZMYM1Q5SVZ6 1142 aa5.5□□□□□ -1.53
PCDH9-201ENST00000377861 RRP36Q96EU6 259 aaKnown RBP5.5□□□□□ -1.53
PCDH9-201ENST00000377861 EXOC1Q9NV70 894 aa5.5□□□□□ -1.53
PCDH9-201ENST00000377861 TERF2Q15554 542 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 THOC1Q96FV9 657 aaKnown RBP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 ENPEPQ07075 957 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 MTHFSDQ2M296 383 aaKnown RBP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 ANKRD35Q8N283 1001 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 CTTNBP2NLQ9P2B4 639 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 MAGEA9P43362 315 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 COPS6Q7L5N1 327 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 CACNA2D3Q8IZS8 1091 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 MRIQ9BWK5 157 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 LMTK2Q8IWU2 1503 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 CEP120Q8N960 986 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 CALUO43852 315 aaPredicted RBP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 TMCO5AQ8N6Q1 288 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 AATFQ9NY61 560 aaKnown RBP eCLIP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 PDE8AO60658 829 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 GAP43P17677 238 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 YWHAEP62258 255 aaKnown RBP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 FANCCQ00597 558 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 PPFIBP2Q8ND30 876 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 BBOX1O75936 387 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 GGPS1O95749 300 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 LSG1Q9H089 658 aaKnown RBP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 A0A1W2PP64 1363 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 KRT13P13646 458 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 LZICQ8WZA0 190 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 TRMT112Q9UI30 125 aaKnown RBP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 XPCQ01831 940 aaPredicted RBP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 SMARCA5O60264 1052 aaPredicted RBP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 ZEB2O60315 1214 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 USP11P51784 963 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 ATP2B3Q16720 1220 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 CCDC114Q96M63 670 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 RAB3IPQ96QF0 476 aaPredicted RBP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 PRC1O43663 620 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 CCDC122Q5T0U0 273 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 CEP63Q96MT8 703 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 STAT6P42226 847 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 DNM3Q9UQ16 869 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 H7C1W4 665 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 KRT39Q6A163 491 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 IKBKGQ9Y6K9 419 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 SMARCC2Q8TAQ2 1214 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 FGFR1OP2Q9NVK5 253 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 XRRA1Q6P2D8 792 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 ZPR1O75312 459 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 HLA-DOAP06340 250 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 NEK11Q8NG66 645 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 HCLS1P14317 486 aaPredicted RBP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 MTIF2P46199 727 aaKnown RBP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 ENOX2Q16206 610 aaKnown RBP5.49□□□□□ -1.53
PCDH9-201ENST00000377861 NT5DC1Q5TFE4 455 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 FAM114A2Q9NRY5 505 aa5.49□□□□□ -1.53
PCDH9-201ENST00000377861 CALCOCO2Q13137 446 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 ANKRD7Q92527 254 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 RNF40O75150 1001 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 SECISBP2LQ93073 1101 aaKnown RBP5.48□□□□□ -1.53
PCDH9-201ENST00000377861 MAML3Q96JK9 1138 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 PPP1R2P1Q96PQ5 205 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 P4HA2O15460 535 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 LEMD3Q9Y2U8 911 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 TRPC3Q13507 836 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 MYSM1Q5VVJ2 828 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 HAUS1Q96CS2 278 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 PA2G4Q9UQ80 394 aaKnown RBP5.48□□□□□ -1.53
PCDH9-201ENST00000377861 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.48□□□□□ -1.53
PCDH9-201ENST00000377861 PDE8BO95263 885 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 ZSCAN20P17040 1043 aaPredicted RBP5.48□□□□□ -1.53
PCDH9-201ENST00000377861 PTPREP23469 700 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 PLA2G4DQ86XP0 818 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 CRACR2BQ8N4Y2 399 aaPredicted RBP5.48□□□□□ -1.53
PCDH9-201ENST00000377861 CDHR1Q96JP9 859 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 IDH1O75874 414 aaKnown RBP5.48□□□□□ -1.53
PCDH9-201ENST00000377861 RAB15P59190 212 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 ZKSCAN8Q15776 578 aaPredicted RBP5.48□□□□□ -1.53
PCDH9-201ENST00000377861 TNNI3KQ59H18 835 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 CCDC28BQ9BUN5 200 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 TMOD2Q9NZR1 351 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 FPGT-TNNI3KV9GXZ4 949 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 PRPF3O43395 683 aaKnown RBP5.48□□□□□ -1.53
PCDH9-201ENST00000377861 STAG1Q8WVM7 1258 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 ROPN1BQ9BZX4 212 aaPredicted RBP5.48□□□□□ -1.53
PCDH9-201ENST00000377861 ROPN1Q9HAT0 212 aaPredicted RBP5.48□□□□□ -1.53
PCDH9-201ENST00000377861 PDE6CP51160 858 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 SERPINB4P48594 390 aa5.48□□□□□ -1.53
PCDH9-201ENST00000377861 BZW1Q7L1Q6 419 aaKnown RBP5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms