RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 BACE1P56817 501 aa17.6■□□□□ 0.41
COL9A1-204ENST00000370496 ZYXQ15942 572 aaKnown RBP17.6■□□□□ 0.41
COL9A1-204ENST00000370496 CLEC10AQ8IUN9 316 aa17.6■□□□□ 0.41
COL9A1-204ENST00000370496 FAM43AQ8N2R8 423 aa17.6■□□□□ 0.41
COL9A1-204ENST00000370496 PTPN18Q99952 460 aa17.6■□□□□ 0.41
COL9A1-204ENST00000370496 ARHGEF10LQ9HCE6 1279 aa17.6■□□□□ 0.41
COL9A1-204ENST00000370496 TMOD4Q9NZQ9 345 aa17.6■□□□□ 0.41
COL9A1-204ENST00000370496 MYH4Q9Y623 1939 aa17.6■□□□□ 0.41
COL9A1-204ENST00000370496 PLIN4Q96Q06 1357 aa17.59■□□□□ 0.41
COL9A1-204ENST00000370496 TSPY3P0CV98 308 aa17.59■□□□□ 0.41
COL9A1-204ENST00000370496 TSPY8P0CW00 308 aa17.59■□□□□ 0.41
COL9A1-204ENST00000370496 GUCY1A2P33402 732 aa17.59■□□□□ 0.41
COL9A1-204ENST00000370496 CTCFP49711 727 aaPredicted RBP17.59■□□□□ 0.41
COL9A1-204ENST00000370496 ATP2B2Q01814 1243 aa17.59■□□□□ 0.41
COL9A1-204ENST00000370496 TAF1CQ15572 869 aaPredicted RBP17.59■□□□□ 0.41
COL9A1-204ENST00000370496 RRP12Q5JTH9 1297 aaKnown RBP17.59■□□□□ 0.41
COL9A1-204ENST00000370496 ANKRD23Q86SG2 305 aa17.59■□□□□ 0.41
COL9A1-204ENST00000370496 TBC1D10CQ8IV04 446 aa17.59■□□□□ 0.41
COL9A1-204ENST00000370496 PROCA1Q8NCQ7 364 aaPredicted RBP17.59■□□□□ 0.41
COL9A1-204ENST00000370496 RNF41Q9H4P4 317 aaPredicted RBP17.59■□□□□ 0.41
COL9A1-204ENST00000370496 SH2D4AQ9H788 454 aa17.59■□□□□ 0.41
COL9A1-204ENST00000370496 ANO2Q9NQ90 1003 aa17.59■□□□□ 0.41
COL9A1-204ENST00000370496 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.59■□□□□ 0.41
COL9A1-204ENST00000370496 TSPY2A6NKD2 308 aa17.58■□□□□ 0.4
COL9A1-204ENST00000370496 RANBP6O60518 1105 aaKnown RBP17.58■□□□□ 0.4
COL9A1-204ENST00000370496 CACNB1Q02641 598 aaPredicted RBP17.58■□□□□ 0.4
COL9A1-204ENST00000370496 PTH1RQ03431 593 aa17.58■□□□□ 0.4
COL9A1-204ENST00000370496 DGKZQ13574 1117 aa17.58■□□□□ 0.4
COL9A1-204ENST00000370496 ZCCHC17Q9NP64 241 aaKnown RBP17.58■□□□□ 0.4
COL9A1-204ENST00000370496 U3KPZ7 1027 aaPredicted RBP17.58■□□□□ 0.4
COL9A1-204ENST00000370496 C19orf81C9J6K1 198 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 PDHXO00330 501 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 ORC4O43929 436 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 HSPA8P11142 646 aaKnown RBP17.57■□□□□ 0.4
COL9A1-204ENST00000370496 PCP11498 1178 aaKnown RBP17.57■□□□□ 0.4
COL9A1-204ENST00000370496 USP14P54578 494 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 CRHR2Q13324 411 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 MAPK8IP2Q13387 824 aaPredicted RBP17.57■□□□□ 0.4
COL9A1-204ENST00000370496 MOGSQ13724 837 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 FAM47AQ5JRC9 791 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 AKNAD1Q5T1N1 836 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 USP17L2Q6R6M4 530 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 MFSD6Q6ZSS7 791 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 ACER1Q8TDN7 264 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 STAG1Q8WVM7 1258 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 NBPF3Q9H094 633 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 KANSL2Q9H9L4 492 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 AGTPBP1Q9UPW5 1226 aa17.57■□□□□ 0.4
COL9A1-204ENST00000370496 TBC1D8O95759 1140 aa17.56■□□□□ 0.4
COL9A1-204ENST00000370496 TFAP4Q01664 338 aa17.56■□□□□ 0.4
COL9A1-204ENST00000370496 PABPC4Q13310 644 aaKnown RBP eCLIP17.56■□□□□ 0.4
COL9A1-204ENST00000370496 SH3D19Q5HYK7 790 aa17.56■□□□□ 0.4
COL9A1-204ENST00000370496 TREML2Q5T2D2 321 aa17.56■□□□□ 0.4
COL9A1-204ENST00000370496 PARK7Q99497 189 aaKnown RBP17.56■□□□□ 0.4
COL9A1-204ENST00000370496 KIAA1683Q9H0B3 1180 aa17.56■□□□□ 0.4
COL9A1-204ENST00000370496 ZFYVE28Q9HCC9 887 aa17.56■□□□□ 0.4
COL9A1-204ENST00000370496 INCENPQ9NQS7 918 aa17.56■□□□□ 0.4
COL9A1-204ENST00000370496 NEDD4P46934 1319 aa17.56■□□□□ 0.4
COL9A1-204ENST00000370496 EEF2P13639 858 aaKnown RBP17.55■□□□□ 0.4
COL9A1-204ENST00000370496 GPAT2Q6NUI2 795 aa17.55■□□□□ 0.4
COL9A1-204ENST00000370496 CEP95Q96GE4 821 aa17.55■□□□□ 0.4
COL9A1-204ENST00000370496 PNMA3Q9UL41 463 aa17.55■□□□□ 0.4
COL9A1-204ENST00000370496 RBM8AQ9Y5S9 174 aaKnown RBP17.55■□□□□ 0.4
COL9A1-204ENST00000370496 RAD21O60216 631 aa17.54■□□□□ 0.4
COL9A1-204ENST00000370496 LBX1P52954 281 aa17.54■□□□□ 0.4
COL9A1-204ENST00000370496 NEDD1Q8NHV4 660 aa17.54■□□□□ 0.4
COL9A1-204ENST00000370496 SMCR8Q8TEV9 937 aaPredicted RBP17.54■□□□□ 0.4
COL9A1-204ENST00000370496 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.54■□□□□ 0.4
COL9A1-204ENST00000370496 CFHR5Q9BXR6 569 aa17.54■□□□□ 0.4
COL9A1-204ENST00000370496 LSG1Q9H089 658 aaKnown RBP17.54■□□□□ 0.4
COL9A1-204ENST00000370496 SLC45A1Q9Y2W3 748 aa17.54■□□□□ 0.4
COL9A1-204ENST00000370496 TACC3Q9Y6A5 838 aa17.54■□□□□ 0.4
COL9A1-204ENST00000370496 A0A1W2PRG0 241 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 FGRP09769 529 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 VCAM1P19320 739 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 IRX3P78415 501 aaPredicted RBP17.53■□□□□ 0.4
COL9A1-204ENST00000370496 PPP4R3BQ5MIZ7 849 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 ESR2Q92731 530 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 MAP4K1Q92918 833 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 C12orf42Q96LP6 360 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 GOPCQ9HD26 462 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 EMILIN3Q9NT22 766 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 IGKV6D-41A0A0C4DH26 115 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 TTLL1O95922 423 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 CYP2C8P10632 490 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 OSBPP22059 807 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 VCPKMTQ9H867 229 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 CNNM2Q9H8M5 875 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 MTMR4Q9NYA4 1195 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 STX8Q9UNK0 236 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 TMX2Q9Y320 296 aa17.53■□□□□ 0.4
COL9A1-204ENST00000370496 CYP21A2P08686 494 aa17.52■□□□□ 0.39
COL9A1-204ENST00000370496 NT5C2P49902 561 aa17.52■□□□□ 0.39
COL9A1-204ENST00000370496 TRDNQ13061 729 aa17.52■□□□□ 0.39
COL9A1-204ENST00000370496 LRRC47Q8N1G4 583 aaKnown RBP17.52■□□□□ 0.39
COL9A1-204ENST00000370496 LPAR1Q92633 364 aa17.52■□□□□ 0.39
COL9A1-204ENST00000370496 KRT23Q9C075 422 aa17.52■□□□□ 0.39
COL9A1-204ENST00000370496 R3HDMLQ9H3Y0 253 aa17.52■□□□□ 0.39
COL9A1-204ENST00000370496 NYAP2Q9P242 653 aa17.52■□□□□ 0.39
COL9A1-204ENST00000370496 CLIP2Q9UDT6 1046 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms