RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 ORC4O43929 436 aa16.29■□□□□ 0.2
CD48-201ENST00000368045 SPATA1Q5VX52 437 aa16.29■□□□□ 0.2
CD48-201ENST00000368045 TMTC3Q6ZXV5 915 aa16.29■□□□□ 0.2
CD48-201ENST00000368045 CMTR1Q8N1G2 835 aaKnown RBP16.29■□□□□ 0.2
CD48-201ENST00000368045 TC2NQ8N9U0 490 aa16.29■□□□□ 0.2
CD48-201ENST00000368045 GSDMAQ96QA5 445 aa16.29■□□□□ 0.2
CD48-201ENST00000368045 AHDC1Q5TGY3 1603 aaPredicted RBP16.29■□□□□ 0.2
CD48-201ENST00000368045 COL1A1P02452 1464 aaPredicted RBP16.29■□□□□ 0.2
CD48-201ENST00000368045 ZBTB22O15209 634 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 TRAPPC10P48553 1259 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 TROAPQ12815 778 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 NR1I3Q14994 352 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 TNFRSF25Q93038 417 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 PANX2Q96RD6 677 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 VPS54Q9P1Q0 977 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.28■□□□□ 0.2
CD48-201ENST00000368045 V9GYY5 206 aaPredicted RBP16.28■□□□□ 0.2
CD48-201ENST00000368045 VWA3AA6NCI4 1184 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 KIF20AO95235 890 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 GYG1P46976 350 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 PDILTQ8N807 584 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 SHISA4Q96DD7 197 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 CTAGE1Q96RT6 745 aa16.28■□□□□ 0.2
CD48-201ENST00000368045 NAA15Q9BXJ9 866 aaKnown RBP16.28■□□□□ 0.2
CD48-201ENST00000368045 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.28■□□□□ 0.2
CD48-201ENST00000368045 V9GY48 417 aaPredicted RBP16.28■□□□□ 0.2
CD48-201ENST00000368045 CACNA1SQ13698 1873 aa16.27■□□□□ 0.2
CD48-201ENST00000368045 IGSF3O75054 1194 aa16.27■□□□□ 0.2
CD48-201ENST00000368045 ATP2B1P20020 1258 aa16.27■□□□□ 0.2
CD48-201ENST00000368045 CUL4BQ13620 913 aa16.27■□□□□ 0.2
CD48-201ENST00000368045 ZNF827Q17R98 1081 aa16.27■□□□□ 0.2
CD48-201ENST00000368045 CTR9Q6PD62 1173 aa16.27■□□□□ 0.2
CD48-201ENST00000368045 USP49Q70CQ1 688 aa16.27■□□□□ 0.2
CD48-201ENST00000368045 GRAMD1CQ8IYS0 662 aa16.27■□□□□ 0.2
CD48-201ENST00000368045 DHX58Q96C10 678 aa16.27■□□□□ 0.2
CD48-201ENST00000368045 PAGE5Q96GU1 130 aa16.27■□□□□ 0.2
CD48-201ENST00000368045 EFCAB8A8MWE9 144 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 FAM193AP78312 1265 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 DPYDQ12882 1025 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 BMS1Q14692 1282 aaKnown RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 ERCC6LQ2NKX8 1250 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 SLC10A5Q5PT55 438 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 TTC38Q5R3I4 469 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 FBXO33Q7Z6M2 555 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 TRMT44Q8IYL2 757 aaKnown RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 MNS1Q8NEH6 495 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 CTCFLQ8NI51 663 aaPredicted RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 UBXN4Q92575 508 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 FAM84BQ96KN1 310 aaPredicted RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 MED15Q96RN5 788 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 ARGLU1Q9NWB6 273 aaPredicted RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 MINPP1Q9UNW1 487 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 IQSEC3Q9UPP2 1182 aaPredicted RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 PARP3Q9Y6F1 533 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 SYNRGQ9UMZ2 1314 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 AKR1B15C9JRZ8 316 aaPredicted RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 TADA3O75528 432 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 PLEKHA8P1O95397 391 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 DYNLL1P63167 89 aaKnown RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 ATP2C1P98194 919 aaPredicted RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 CDKAL1Q5VV42 579 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 MARCH10Q8NA82 808 aaPredicted RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 SYMPKQ92797 1274 aaKnown RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 CRNKL1Q9BZJ0 848 aaKnown RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 SAMSN1Q9NSI8 373 aaKnown RBP16.26■□□□□ 0.19
CD48-201ENST00000368045 ATP8A2Q9NTI2 1148 aa16.26■□□□□ 0.19
CD48-201ENST00000368045 CNTNAP5Q8WYK1 1306 aa16.25■□□□□ 0.19
CD48-201ENST00000368045 A0A087X0B3 334 aa16.25■□□□□ 0.19
CD48-201ENST00000368045 URI1O94763 535 aaPredicted RBP16.25■□□□□ 0.19
CD48-201ENST00000368045 CASQ1P31415 396 aa16.25■□□□□ 0.19
CD48-201ENST00000368045 NPY5RQ15761 445 aa16.25■□□□□ 0.19
CD48-201ENST00000368045 ERFEQ4G0M1 354 aa16.25■□□□□ 0.19
CD48-201ENST00000368045 FILIP1LQ4L180 1135 aa16.25■□□□□ 0.19
CD48-201ENST00000368045 SBK1Q52WX2 424 aa16.25■□□□□ 0.19
CD48-201ENST00000368045 ACSBG1Q96GR2 724 aa16.25■□□□□ 0.19
CD48-201ENST00000368045 EPSTI1Q96J88 318 aa16.25■□□□□ 0.19
CD48-201ENST00000368045 SCN7AQ01118 1682 aa16.24■□□□□ 0.19
CD48-201ENST00000368045 DLEC1Q9Y238 1755 aa16.24■□□□□ 0.19
CD48-201ENST00000368045 FAM205CA6NFA0 338 aa16.24■□□□□ 0.19
CD48-201ENST00000368045 GOLGA8FQ08AF8 430 aa16.24■□□□□ 0.19
CD48-201ENST00000368045 GOLGA8DPQ0D2H9 430 aa16.24■□□□□ 0.19
CD48-201ENST00000368045 ARHGAP29Q52LW3 1261 aa16.24■□□□□ 0.19
CD48-201ENST00000368045 EARS2Q5JPH6 523 aaKnown RBP16.24■□□□□ 0.19
CD48-201ENST00000368045 APTXQ7Z2E3 356 aaKnown RBP16.24■□□□□ 0.19
CD48-201ENST00000368045 CREBRFQ8IUR6 639 aa16.24■□□□□ 0.19
CD48-201ENST00000368045 IQUBQ8NA54 791 aa16.24■□□□□ 0.19
CD48-201ENST00000368045 NSUN4Q96CB9 384 aaKnown RBP16.24■□□□□ 0.19
CD48-201ENST00000368045 CCDC51Q96ER9 411 aa16.24■□□□□ 0.19
CD48-201ENST00000368045 ARPP21Q9UBL0 812 aaPredicted RBP16.24■□□□□ 0.19
CD48-201ENST00000368045 ZNF831Q5JPB2 1677 aa16.24■□□□□ 0.19
CD48-201ENST00000368045 USP17L12C9JPN9 530 aa16.23■□□□□ 0.19
CD48-201ENST00000368045 USP17L21D6R901 530 aa16.23■□□□□ 0.19
CD48-201ENST00000368045 SCG2P13521 617 aa16.23■□□□□ 0.19
CD48-201ENST00000368045 PBX1P40424 430 aa16.23■□□□□ 0.19
CD48-201ENST00000368045 PPFIBP1Q86W92 1011 aa16.23■□□□□ 0.19
CD48-201ENST00000368045 ZNF384Q8TF68 577 aa16.23■□□□□ 0.19
CD48-201ENST00000368045 ANKRD2Q9GZV1 360 aa16.23■□□□□ 0.19
CD48-201ENST00000368045 ADD3Q9UEY8 706 aaKnown RBP16.23■□□□□ 0.19
CD48-201ENST00000368045 ITIH6Q6UXX5 1313 aa16.23■□□□□ 0.19
CD48-201ENST00000368045 A0A1B0GUL6 1792 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms