RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 MAP3K9P80192 1104 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 SPP2Q13103 211 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 Q6ZUG5 572 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 RUFY3Q7L099 469 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 LRRC47Q8N1G4 583 aaKnown RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 SMC1BQ8NDV3 1235 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 DDRGK1Q96HY6 314 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 PTPN18Q99952 460 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 R3HDMLQ9H3Y0 253 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 LY9Q9HBG7 655 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 CLIP2Q9UDT6 1046 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 TNKSO95271 1327 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 TRIM75PA6NK02 468 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 FAM155AB1AL88 458 aaPredicted RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 PPP1R12BO60237 982 aaPredicted RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 CTNND1O60716 968 aaKnown RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 TSPY3P0CV98 308 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 TSPY8P0CW00 308 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 RPS6KB1P23443 525 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 HUNKP57058 714 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 PDE4BQ07343 736 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 APOBRQ0VD83 1088 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 CYP4F22Q6NT55 531 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 ZNF444Q8N0Y2 327 aaPredicted RBP4.76□□□□□ -1.65
LIG4-201ENST00000356922 OTUD5Q96G74 571 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 TMEM47Q9BQJ4 181 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 ZNF341Q9BYN7 854 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 TPCN1Q9ULQ1 816 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 STX8Q9UNK0 236 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 PPP2R3BQ9Y5P8 575 aa4.76□□□□□ -1.65
LIG4-201ENST00000356922 SMCHD1A6NHR9 2005 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 GOLGA8HP0CJ92 632 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 TAL1P17542 331 aaPredicted RBP4.75□□□□□ -1.65
LIG4-201ENST00000356922 SLC4A3P48751 1232 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 AK2P54819 239 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 ATP2B2Q01814 1243 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 GRM1Q13255 1194 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 DHX32Q7L7V1 743 aaKnown RBP4.75□□□□□ -1.65
LIG4-201ENST00000356922 CCDC144CPQ8IYA2 1237 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 STAG2Q8N3U4 1231 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 NCOA7Q8NI08 942 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 BRF1Q92994 677 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 WNK4Q96J92 1243 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 MS4A4AQ96JQ5 239 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 ZSCAN10Q96SZ4 725 aaPredicted RBP4.75□□□□□ -1.65
LIG4-201ENST00000356922 EMILIN3Q9NT22 766 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 FAM217BQ9NTX9 383 aaPredicted RBP4.75□□□□□ -1.65
LIG4-201ENST00000356922 HPS5Q9UPZ3 1129 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 AFG3L2Q9Y4W6 797 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 LAMA3Q16787 3333 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 PHIPQ8WWQ0 1821 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 GREB1LQ9C091 1923 aaPredicted RBP4.75□□□□□ -1.65
LIG4-201ENST00000356922 AOC2O75106 756 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 ZKSCAN1P17029 563 aaPredicted RBP4.75□□□□□ -1.65
LIG4-201ENST00000356922 TROAPQ12815 778 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 TREML2Q5T2D2 321 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 TTBK2Q6IQ55 1244 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 SCYL3Q8IZE3 742 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 OPTNQ96CV9 577 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 AGXT2Q9BYV1 514 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 NCOA5Q9HCD5 579 aaKnown RBP4.75□□□□□ -1.65
LIG4-201ENST00000356922 USP17L5A8MUK1 530 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 SH2B2O14492 632 aaPredicted RBP4.75□□□□□ -1.65
LIG4-201ENST00000356922 MCCP23508 829 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 CDC27P30260 824 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 MTMR2Q13614 643 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 USP17L2Q6R6M4 530 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 NECAB1Q8N987 351 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 ESR2Q92731 530 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 FBXO28Q9NVF7 368 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 SWAP70Q9UH65 585 aa4.75□□□□□ -1.65
LIG4-201ENST00000356922 hCG_1642624A0A1W2PR95 340 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 TMEM88BA6NKF7 163 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 IFIT3O14879 490 aaKnown RBP4.74□□□□□ -1.65
LIG4-201ENST00000356922 EPB41L2O43491 1005 aaKnown RBP4.74□□□□□ -1.65
LIG4-201ENST00000356922 MYCNP04198 464 aaPredicted RBP4.74□□□□□ -1.65
LIG4-201ENST00000356922 ADD1P35611 737 aaKnown RBP4.74□□□□□ -1.65
LIG4-201ENST00000356922 HMGCS2P54868 508 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 SNAP25P60880 206 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 ME3Q16798 604 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 RNF20Q5VTR2 975 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 BLOC1S2Q6QNY1 142 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 ANKRD13AQ8IZ07 590 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 TM6SF1Q9BZW5 370 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 ATAD5Q96QE3 1844 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 F5H6K3 240 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 ADAMTS3O15072 1205 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 MCM5P33992 734 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 APLP1P51693 650 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 ANAPC15P60006 121 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 ICA1Q05084 483 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 KLRC3Q07444 240 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 STK3Q13188 491 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 TMEM67Q5HYA8 995 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 TMEM179Q6ZVK1 233 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 KCTD1Q719H9 257 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 CCDC82Q8N4S0 544 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 C2orf69Q8N8R5 385 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 SLC10A4Q96EP9 437 aa4.74□□□□□ -1.65
LIG4-201ENST00000356922 PDRG1Q9NUG6 133 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms