RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 JAK2O60674 1132 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 NF2P35240 595 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 C16orf86Q6ZW13 317 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 PNMA8AQ86V59 439 aaPredicted RBP10.79□□□□□ -0.68
USP4-202ENST00000351842 ZNF287Q9HBT7 754 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 GJB4Q9NTQ9 266 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 ZHX2Q9Y6X8 837 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 MYH1P12882 1939 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 TAL1P17542 331 aaPredicted RBP10.79□□□□□ -0.68
USP4-202ENST00000351842 ANAPC15P60006 121 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 SPP2Q13103 211 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 CDC37L1Q7L3B6 337 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 TEPSINQ96N21 525 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 ZNF341Q9BYN7 854 aa10.79□□□□□ -0.68
USP4-202ENST00000351842 GOLGA8AA7E2F4 631 aa10.78□□□□□ -0.68
USP4-202ENST00000351842 K7ELQ4 463 aaPredicted RBP10.78□□□□□ -0.68
USP4-202ENST00000351842 EEF2P13639 858 aaKnown RBP10.78□□□□□ -0.68
USP4-202ENST00000351842 GIMAP6Q6P9H5 292 aa10.78□□□□□ -0.68
USP4-202ENST00000351842 PICK1Q9NRD5 415 aa10.78□□□□□ -0.68
USP4-202ENST00000351842 ABT1Q9ULW3 272 aaKnown RBP10.78□□□□□ -0.68
USP4-202ENST00000351842 TIAM2Q8IVF5 1701 aa10.78□□□□□ -0.68
USP4-202ENST00000351842 SBK1Q52WX2 424 aa10.78□□□□□ -0.68
USP4-202ENST00000351842 USP50Q70EL3 339 aaPredicted RBP10.78□□□□□ -0.68
USP4-202ENST00000351842 CERS3Q8IU89 383 aa10.78□□□□□ -0.68
USP4-202ENST00000351842 PNMA1Q8ND90 353 aa10.78□□□□□ -0.68
USP4-202ENST00000351842 LIMCH1Q9UPQ0 1083 aa10.78□□□□□ -0.68
USP4-202ENST00000351842 ZBTB43O43298 467 aa10.77□□□□□ -0.68
USP4-202ENST00000351842 METAP2P50579 478 aaKnown RBP eCLIP10.77□□□□□ -0.68
USP4-202ENST00000351842 ZBED3Q96IU2 234 aaPredicted RBP10.77□□□□□ -0.68
USP4-202ENST00000351842 MRIQ9BWK5 157 aa10.77□□□□□ -0.68
USP4-202ENST00000351842 PEX10O60683 326 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 SUPT20HL1Q3ZLR7 823 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 OTUD7BQ6GQQ9 843 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 FOXP4Q8IVH2 680 aaPredicted RBP10.77□□□□□ -0.69
USP4-202ENST00000351842 CHAMP1Q96JM3 812 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 L3MBTL3Q96JM7 780 aaPredicted RBP10.77□□□□□ -0.69
USP4-202ENST00000351842 TMEM47Q9BQJ4 181 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 LY9Q9HBG7 655 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 RPAP1Q9BWH6 1393 aaPredicted RBP10.77□□□□□ -0.69
USP4-202ENST00000351842 HMGB1P09429 215 aaKnown RBP10.77□□□□□ -0.69
USP4-202ENST00000351842 CATIPQ7Z7H3 387 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 FAM83AQ86UY5 434 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 ZNF654Q8IZM8 581 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 STAG2Q8N3U4 1231 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 AIFM3Q96NN9 605 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 ZBTB21Q9ULJ3 1066 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.77□□□□□ -0.69
USP4-202ENST00000351842 CSADQ9Y600 493 aa10.77□□□□□ -0.69
USP4-202ENST00000351842 VPS37CA5D8V6 355 aaPredicted RBP10.76□□□□□ -0.69
USP4-202ENST00000351842 USP17L5A8MUK1 530 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 SH2B2O14492 632 aaPredicted RBP10.76□□□□□ -0.69
USP4-202ENST00000351842 MTMR2Q13614 643 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 FERMT3Q86UX7 667 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 MTMR14Q8NCE2 650 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 PLEKHA8P1O95397 391 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 HMGCS2P54868 508 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 GABPAQ06546 454 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 SCRN1Q12765 414 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 VGLL4Q14135 290 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 DCAF15Q66K64 600 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 TTBK2Q6IQ55 1244 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 APOA5Q6Q788 366 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 ZNF784Q8NCA9 323 aaPredicted RBP10.76□□□□□ -0.69
USP4-202ENST00000351842 IGDCC4Q8TDY8 1250 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 TTC14Q96N46 770 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 SLC26A6Q9BXS9 759 aa10.76□□□□□ -0.69
USP4-202ENST00000351842 A0A1W2PRG0 241 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 EXOSC10Q01780 885 aaKnown RBP10.75□□□□□ -0.69
USP4-202ENST00000351842 MCTP1Q6DN14 999 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.75□□□□□ -0.69
USP4-202ENST00000351842 TANGO6Q9C0B7 1094 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 MKI67P46013 3256 aaKnown RBP10.75□□□□□ -0.69
USP4-202ENST00000351842 PDIA3P30101 505 aaKnown RBP10.75□□□□□ -0.69
USP4-202ENST00000351842 CDC27P30260 824 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 CAP2P40123 477 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 HUNKP57058 714 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 CTCFLQ8NI51 663 aaPredicted RBP10.75□□□□□ -0.69
USP4-202ENST00000351842 FBXO28Q9NVF7 368 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 SMC3Q9UQE7 1217 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 SLC1A4P43007 532 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 PKP1Q13835 747 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 FAM184AQ8NB25 1140 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 MTMR4Q9NYA4 1195 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 SWAP70Q9UH65 585 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 ANAPC4Q9UJX5 808 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 DNAH12Q6ZR08 3092 aa10.75□□□□□ -0.69
USP4-202ENST00000351842 DICER1Q9UPY3 1922 aaKnown RBP10.74□□□□□ -0.69
USP4-202ENST00000351842 ORC4O43929 436 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 RTN1Q16799 776 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 RCSD1Q6JBY9 416 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 GADL1Q6ZQY3 521 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 CPXCR1Q8N123 301 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 KIFC2Q96AC6 838 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 TM6SF1Q9BZW5 370 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 HERC5Q9UII4 1024 aaKnown RBP10.74□□□□□ -0.69
USP4-202ENST00000351842 USP2O75604 605 aaPredicted RBP10.74□□□□□ -0.69
USP4-202ENST00000351842 TTLL1O95922 423 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 ATP2B1P20020 1258 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 NBPF11Q86T75 865 aa10.74□□□□□ -0.69
USP4-202ENST00000351842 LDHDQ86WU2 507 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms